miRNA-SNP Analysis

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References
1 CPSS CPSS is (a computational platform for the analysis of small RNA deep sequencing data), designed to completely annotate and functionally analyse microRNAs (miRNAs) from NGS data on one platform with a single data submission. /
  • human
  • mouse
  • rat
  • chicken
  • fish
  • other animals (selectable)
  • NGS Data
  • Homepage

    Publication
    May 9, 2012
    Citations: 17
    2 MicroSNiPer MicroSNiPer predicts the impact of a SNP on putative microRNA targets. /
  • human
  • target (ID) or SNP (ID) or target (sequence) and SNP (position)
  • Homepage

    Publication
    Oct. 7, 2010
    Citations: 47
    3 miR2GO miR2GO is a web-based platform for comparative analyses of human miRNA functions. It includes two programs: miRmut2GO and miRpair2GO. miRmut2GO implements a knowledge-based method to assess the functional effects of genetic and somatic mutations in microRNA seed regions. The functional effects of a mutation are analysed by semantic comparison of enriched gene ontology (GO) annotations of the target gene sets for the wild-type and mutated alleles. miRpair2GO compares the functions of two different miRNAs based on the enriched functional annotations of their target gene sets. /
  • human
  • miRNA sequences or miRNA Ids or dbSNP Ids or miRNA pairs
  • Homepage

    Publication
    March 10, 2015
    Citations: 6
    4 miRNA SniPer An online tool for the detection of miRNA polymorphisms in vertebrates. miRNA SNiPer accepts a list of miRNA genes and returns a table of variations within different regions of miRNA genes: pre-miRNA, mature, seed region. /
  • human
  • mouse
  • chicken
  • rat
  • fish
  • fly
  • other animals (selectable)
  • plants (selectable)
  • list of miRNA names
  • Homepage

    Publication
    Jan. 27, 2012
    Citations: 23
    5 MirSNP MirSNP is a collection of human SNPs in predicted miRNA-mRNA binding sites. /
  • human
  • list of gene names or list of miRNA names or list of SNPS
  • Homepage

    Publication
    Nov. 23, 2012
    Citations: 66
    6 mrSNP mrSNP provides a web service for researchers working especially with RNA-Seq Data, to predict the impact of a SNP in a 3UTR on miRNA binding. /
  • human
  • mouse
  • rat
  • fish
  • fly
  • worm
  • chicken
  • other animals (selectable)
  • SNP informaion
  • Homepage

    Publication
    March 15, 2014
    Citations: 17
    7 submiRine An open-source software package for predicting microRNA target site variants (miR-TSVs) from clinical genomic data sets that measure miRNA expression, gene expression, and genotype. The main benefits of SubmiRine are that it allows for de novo prediction of miR-TSVs from custom data sets - such as those that can be generated from large-scale clinical genomics projects - and provides a methodology to prioritize predicted miR-TSVs by their relative probability of being functional. /
  • human
  • miRNA & mRNA expression info
  • Homepage

    Publication
    March 26, 2015
    Citations: 3