All the tools you need to analyse your miRNAs

Overview
Tools4miRs is a first, manually curated platform gathering at the present over 170 methods for the broadly-defined miRNA analysis. All tools in Tools4miRs are classified in the four general and seven more detailed categories. In each of the aforementioned sections user can additionally filter available methods according to his research needs, capabilities and preferences. Beside basic summary seen at first glance, the user can get detailed information concerning each tool. Tools4miRs is also a web-based target prediction meta-server incorporating user-designated target prediction methods in the analysis of user-provided data. Results generated by described meta-server can be presented in basic and extended form, while user can can additionally filter them using Union, Intersection or Consensus method. Tools4miRs is free, open-access service which will be systematically updated.
miRNA Biogenesis and Function
Concept, Design, Animation: Katharina Petsche
Statistics
Tools4miRs v.1.1
Number of tools: 200
Last update: Dec. 16, 2017, 12:01 a.m.
Latest Literature
  • Regulation of T cell proliferation with drug-responsive microRNA switches.
    Wong RS, Chen YY, Smolke CD
    Nucleic Acids Res. 2017 Dec 13;: Pubmed >>
  • The Arabidopsis thaliana F-box gene HAWAIIAN SKIRT is a new player in the microRNA pathway.
    Zhang X, Jayaweera D, Peters JL, Szecsi J, Bendahmane M, Roberts JA, González-Carranza ZH
    PLoS One. 2017;12(12):e0189788 Pubmed >>
  • A FTH1 gene:pseudogene:microRNA network regulates tumorigenesis in prostate cancer.
    Chan JJ, Kwok ZH, Chew XH, Zhang B, Liu C, Soong TW, Yang H, Tay Y
    Nucleic Acids Res. 2017 Dec 12;: Pubmed >>
  • Deep experimental profiling of microRNA diversity, deployment, and evolution across the Drosophila genus.
    Mohammed J, Flynt AS, Panzarino AM, Mondal MMH, DeCruz M, Siepel A, Lai EC
    Genome Res. 2017 Dec 12;: Pubmed >>
  • The landscape of miRNA editing in animals and its impact on miRNA biogenesis and targeting.
    Li L, Song Y, Shi X, Liu J, Xiong S, Chen W, Fu Q, Huang Z, Gu N, Zhang R
    Genome Res. 2017 Dec 12;: Pubmed >>
  • TarHunter, a tool for predicting conserved microRNA targets and target mimics in plants.
    Ma X, Liu C, Gu L, Mo B, Cao X, Chen X
    Bioinformatics. 2017 Dec 11;: Pubmed >>
  • MicroRNA-93 promotes proliferation and metastasis of gastric cancer via targeting TIMP2.
    Guan H, Li W, Li Y, Wang J, Li Y, Tang Y, Lu S
    PLoS One. 2017;12(12):e0189490 Pubmed >>
  • MicroRNA-100 Suppresses Chronic Vascular Inflammation by Stimulation of Endothelial Autophagy.
    Pankratz F, Hohnloser C, Bemtgen X, Jaenich C, Kreuzaler S, Hoefer IE, Pasterkamp G, Mastroianni J, Zeiser R, Smolka C, Schneider LA, Martin J, Juschkat M, Helbing T, Moser M, Bode C, Grundmann S
    Circ Res. 2017 Dec 05;: Pubmed >>
  • miPrimer: An empirical-based qPCR primer design method for small non-coding microRNA.
    Kang ST, Hsieh YS, Feng CT, Chen YT, Yang PE, Chen WM
    RNA. 2017 Dec 05;: Pubmed >>
  • Comparison of miRNA quantitation by Nanostring in serum and plasma samples.
    Foye C, Yan IK, David W, Shukla N, Habboush Y, Chase L, Ryland K, Kesari V, Patel T
    PLoS One. 2017;12(12):e0189165 Pubmed >>
  • A unique plasma microRNA profile defines type 2 diabetes progression.
    de Candia P, Spinetti G, Specchia C, Sangalli E, La Sala L, Uccellatore A, Lupini S, Genovese S, Matarese G, Ceriello A
    PLoS One. 2017;12(12):e0188980 Pubmed >>
  • MicroRNA profile in HBV-induced infection and hepatocellular carcinoma.
    Wang G, Dong F, Xu Z, Sharma S, Hu X, Chen D, Zhang L, Zhang J, Dong Q
    BMC Cancer. 2017 Dec 01;17(1):805 Pubmed >>
  • Hyperthyroidism, but not hypertension, impairs PITX2 expression leading to Wnt-microRNA-ion channel remodeling.
    Lozano-Velasco E, Wangensteen R, Quesada A, Garcia-Padilla C, Osorio JA, Ruiz-Torres MD, Aranega A, Franco D
    PLoS One. 2017;12(12):e0188473 Pubmed >>
  • mirDIP 4.1-integrative database of human microRNA target predictions.
    Tokar T, Pastrello C, Rossos AEM, Abovsky M, Hauschild AC, Tsay M, Lu R, Jurisica I
    Nucleic Acids Res. 2017 Nov 29;: Pubmed >>
  • MicroRNA dynamics at the onset of primordial germ and somatic cells sex differentiation during mouse embryonic gonad development.
    Fernandez-Perez D, Brieño-Enriquez MA, Isoler-Alcaraz J, Larriba E, Del Mazo J
    RNA. 2017 Nov 29;: Pubmed >>
  • Retraction: Exploration of inhibitory mechanisms of curcumin in lung cancer metastasis using a miRNA- transcription factor-target gene network.
    Jiao DM, Yan L, Wang LS, Hu HZ, Tang XL, Chen J, Wang J, Li Y, Chen QY, PLOS ONE Editors
    PLoS One. 2017;12(11):e0189070 Pubmed >>
  • Osteoglycin inhibition by microRNA miR-155 impairs myogenesis.
    Freire PP, Cury SS, de Oliveira G, Fernandez GJ, Moraes LN, da Silva Duran BO, Ferreira JH, Fuziwara CS, Kimura ET, Dal-Pai-Silva M, Carvalho RF
    PLoS One. 2017;12(11):e0188464 Pubmed >>
  • DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA-gene interactions.
    Karagkouni D, Paraskevopoulou MD, Chatzopoulos S, Vlachos IS, Tastsoglou S, Kanellos I, Papadimitriou D, Kavakiotis I, Maniou S, Skoufos G, Vergoulis T, Dalamagas T, Hatzigeorgiou AG
    Nucleic Acids Res. 2017 Nov 16;: Pubmed >>
  • Conservation of a microRNA cluster in parasitic nematodes and profiling of miRNAs in excretory-secretory products and microvesicles of Haemonchus contortus.
    Gu HY, Marks ND, Winter AD, Weir W, Tzelos T, McNeilly TN, Britton C, Devaney E
    PLoS Negl Trop Dis. 2017 Nov 16;11(11):e0006056 Pubmed >>
  • Steps to achieve quantitative measurements of microRNA using two step droplet digital PCR.
    Stein EV, Duewer DL, Farkas N, Romsos EL, Wang L, Cole KD
    PLoS One. 2017;12(11):e0188085 Pubmed >>