All the tools you need to analyse your miRNAs

Overview
Tools4miRs is a first, manually curated platform gathering at the present over 170 methods for the broadly-defined miRNA analysis. All tools in Tools4miRs are classified in the four general and seven more detailed categories. In each of the aforementioned sections user can additionally filter available methods according to his research needs, capabilities and preferences. Beside basic summary seen at first glance, the user can get detailed information concerning each tool. Tools4miRs is also a web-based target prediction meta-server incorporating user-designated target prediction methods in the analysis of user-provided data. Results generated by described meta-server can be presented in basic and extended form, while user can can additionally filter them using Union, Intersection or Consensus method. Tools4miRs is free, open-access service which will be systematically updated.
miRNA Biogenesis and Function
Concept, Design, Animation: Katharina Petsche
Statistics
Tools4miRs v.1.1
Number of tools: 201
Last update: Dec. 8, 2018, 12:02 a.m.
Latest Literature
  • MicroRNA characterization in equine induced pluripotent stem cells.
    Moro LN, Amin G, Furmento V, Waisman A, Garate X, Neiman G, La Greca A, Santín Velazque NL, Luzzani C, Sevlever GE, Vichera G, Miriuka SG
    PLoS One. 2018;13(12):e0207074 Pubmed >>
  • miRDeep-P2: accurate and fast analysis of the microRNA transcriptome in plants.
    Kuang Z, Wang Y, Li L, Yang X
    Bioinformatics. 2018 Dec 06;: Pubmed >>
  • miRTrace reveals the organismal origins of microRNA sequencing data.
    Kang W, Eldfjell Y, Fromm B, Estivill X, Biryukova I, Friedländer MR
    Genome Biol. 2018 Dec 04;19(1):213 Pubmed >>
  • Relationship of peripheral blood mononuclear cells miRNA expression and parasitic load in canine visceral leishmaniasis.
    Bragato JP, Melo LM, Venturin GL, Rebech GT, Garcia LE, Lopes FL, de Lima VMF
    PLoS One. 2018;13(12):e0206876 Pubmed >>
  • miRTissue: a web application for the analysis of miRNA-target interactions in human tissues.
    Fiannaca A, La Rosa M, La Paglia L, Urso A
    BMC Bioinformatics. 2018 Nov 30;19(Suppl 15):434 Pubmed >>
  • miRNA length variation during macrophage stimulation confounds the interpretation of results: implications for miRNA quantification by RT-qPCR.
    Pillman KA, Goodall GJ, Bracken CP, Gantier MP
    RNA. 2018 Nov 28;: Pubmed >>
  • Prediction of plant-derived xenomiRs from plant miRNA sequences using random forest and one-dimensional convolutional neural network models.
    Zhao Q, Mao Q, Zhao Z, Dou T, Wang Z, Cui X, Liu Y, Fan X
    BMC Genomics. 2018 Nov 26;19(1):839 Pubmed >>
  • MicroRNA 399 as a potential integrator of photo-response, phosphate homeostasis, and sucrose signaling under long day condition.
    Tian L, Liu H, Ren L, Ku L, Wu L, Li M, Wang S, Zhou J, Song X, Zhang J, Dou D, Liu H, Tang G, Chen Y
    BMC Plant Biol. 2018 Nov 21;18(1):290 Pubmed >>
  • Exploration of exosomal microRNA expression profiles in pigeon 'Milk' during the lactation period.
    Ma Y, Feng S, Wang X, Qazi IH, Long K, Luo Y, Li G, Ning C, Wang Y, Hu S, Xiao J, Li X, Lan D, Hu Y, Tang Q, Ma J, Jin L, Jiang A, Li M
    BMC Genomics. 2018 Nov 20;19(1):828 Pubmed >>
  • MicroRNA-451a overexpression induces accelerated neuronal differentiation of Ntera2/D1 cells and ablation affects neurogenesis in microRNA-451a-/- mice.
    Trattnig C, Üçal M, Tam-Amersdorfer C, Bucko A, Zefferer U, Grünbacher G, Absenger-Novak M, Öhlinger KA, Kraitsy K, Hamberger D, Schaefer U, Patz S
    PLoS One. 2018;13(11):e0207575 Pubmed >>
  • Mapping the Pax6 3' untranslated region microRNA regulatory landscape.
    Ryan BC, Lowe K, Hanson L, Gil T, Braun L, Howard PL, Chow RL
    BMC Genomics. 2018 Nov 15;19(1):820 Pubmed >>
  • MicroRNA profiling analysis of developing berries for 'Kyoho' and its early-ripening mutant during berry ripening.
    Guo DL, Li Q, Lv WQ, Zhang GH, Yu YH
    BMC Plant Biol. 2018 Nov 16;18(1):285 Pubmed >>
  • Botulinum toxin A-induced muscle paralysis stimulates Hdac4 and differential miRNA expression.
    Worton LE, Gardiner EM, Kwon RY, Downey LM, Ausk BJ, Bain SD, Gross TS
    PLoS One. 2018;13(11):e0207354 Pubmed >>
  • miRBase: from microRNA sequences to function.
    Kozomara A, Birgaoanu M, Griffiths-Jones S
    Nucleic Acids Res. 2018 Nov 13;: Pubmed >>
  • Comparative mRNA and miRNA transcriptome analysis of a mouse model of IGFIR-driven lung cancer.
    Jones RA, Franks SE, Moorehead RA
    PLoS One. 2018;13(11):e0206948 Pubmed >>
  • Integration of genetics and miRNA-target gene network identified disease biology implicated in tissue specificity.
    Sakaue S, Hirata J, Maeda Y, Kawakami E, Nii T, Kishikawa T, Ishigaki K, Terao C, Suzuki K, Akiyama M, Suita N, Masuda T, Ogawa K, Yamamoto K, Saeki Y, Matsushita M, Yoshimura M, Matsuoka H, Ikari K, Taniguchi A, Yamanaka H, Kawaji H, Lassmann T, Itoh M, Yoshitomi H, Ito H, Ohmura K, R Forrest AR, Hayashizaki Y, Carninci P, Kumanogoh A, Kamatani Y, de Hoon M, Yamamoto K, Okada Y
    Nucleic Acids Res. 2018 Nov 08;: Pubmed >>
  • Alterations in exosomal miRNA profile upon epithelial-mesenchymal transition in human lung cancer cell lines.
    Tang YT, Huang YY, Li JH, Qin SH, Xu Y, An TX, Liu CC, Wang Q, Zheng L
    BMC Genomics. 2018 Nov 06;19(1):802 Pubmed >>
  • Polypyrimidine tract-binding protein blocks miRNA-124 biogenesis to enforce its neuronal-specific expression in the mouse.
    Yeom KH, Mitchell S, Linares AJ, Zheng S, Lin CH, Wang XJ, Hoffmann A, Black DL
    Proc Natl Acad Sci U S A. 2018 Nov 06;: Pubmed >>
  • Circulating miRNA measurements are reflective of cholesterol-based changes in rainbow trout (Oncorhynchus mykiss).
    Zhu T, Corraze G, Plagnes-Juan E, Skiba-Cassy S
    PLoS One. 2018;13(11):e0206727 Pubmed >>
  • Profiling the miRNA-mRNA-lncRNA interaction network in MSC osteoblast differentiation induced by (+)-cholesten-3-one.
    Hou Q, Huang Y, Liu Y, Luo Y, Wang B, Deng R, Zhang S, Liu F, Chen D
    BMC Genomics. 2018 Oct 29;19(1):783 Pubmed >>