All the tools you need to analyse your miRNAs

Overview
Tools4miRs is a first, manually curated platform gathering at the present over 170 methods for the broadly-defined miRNA analysis. All tools in Tools4miRs are classified in the four general and seven more detailed categories. In each of the aforementioned sections user can additionally filter available methods according to his research needs, capabilities and preferences. Beside basic summary seen at first glance, the user can get detailed information concerning each tool. Tools4miRs is also a web-based target prediction meta-server incorporating user-designated target prediction methods in the analysis of user-provided data. Results generated by described meta-server can be presented in basic and extended form, while user can can additionally filter them using Union, Intersection or Consensus method. Tools4miRs is free, open-access service which will be systematically updated.
miRNA Biogenesis and Function
Concept, Design, Animation: Katharina Petsche
Statistics
Tools4miRs v.1.1
Number of tools: 201
Last update: Aug. 16, 2018, 12:01 a.m.
Latest Literature
  • MicroRNA regulation in blood cells of renal transplanted patients with interstitial fibrosis/tubular atrophy and antibody-mediated rejection.
    Matz M, Heinrich F, Lorkowski C, Wu K, Klotsche J, Zhang Q, Lachmann N, Durek P, Budde K, Mashreghi MF
    PLoS One. 2018;13(8):e0201925 Pubmed >>
  • SnapShot: Unconventional miRNA Functions.
    Dragomir MP, Knutsen E, Calin GA
    Cell. 2018 Aug 09;174(4):1038-1038.e1 Pubmed >>
  • Small RNA-seq analysis of single porcine blastocysts revealed that maternal estradiol-17beta exposure does not affect miRNA isoform (isomiR) expression.
    Bick JT, Flöter VL, Robinson MD, Bauersachs S, Ulbrich SE
    BMC Genomics. 2018 Aug 06;19(1):590 Pubmed >>
  • Combination of a six microRNA expression profile with four clinicopathological factors for response prediction of systemic treatment in patients with advanced colorectal cancer.
    Neerincx M, Poel D, Sie DLS, van Grieken NCT, Shankaraiah RC, van der Wolf-de Lijster FSW, van Waesberghe JTM, Burggraaf JD, Eijk PP, Verhoef C, Ylstra B, Meijer GA, van de Wiel MA, Buffart TE, Verheul HMW
    PLoS One. 2018;13(8):e0201809 Pubmed >>
  • Identification and expression analysis of a microRNA cluster derived from pre-ribosomal RNA in Papaver somniferum L. and Papaver bracteatum L.
    Davoodi Mastakani F, Pagheh G, Rashidi Monfared S, Shams-Bakhsh M
    PLoS One. 2018;13(8):e0199673 Pubmed >>
  • Death of new microRNA genes in Drosophila via gradual loss of fitness advantages.
    Lu GA, Zhao Y, Lan A, Shi S, Liufu Z, Tang T, Xu J, Shen X, Wu CI
    Genome Res. 2018 Jul 26;: Pubmed >>
  • Characterization of hepatocellular adenoma and carcinoma using microRNA profiling and targeted gene sequencing.
    Zheng J, Sadot E, Vigidal JA, Klimstra DS, Balachandran VP, Kingham TP, Allen PJ, D'Angelica MI, DeMatteo RP, Jarnagin WR, Ventura A
    PLoS One. 2018;13(7):e0200776 Pubmed >>
  • The RNA binding protein EWS is broadly involved in the regulation of pri-miRNA processing in mammalian cells.
    Ouyang H, Zhang K, Fox-Walsh K, Yang Y, Zhang C, Huang J, Li H, Zhou Y, Fu XD
    Nucleic Acids Res. 2017 Dec 01;45(21):12481-12495 Pubmed >>
  • Genome-wide analysis of NGS data to compile cancer-specific panels of miRNA biomarkers.
    Bhowmick SS, Saha I, Bhattacharjee D, Genovese LM, Geraci F
    PLoS One. 2018;13(7):e0200353 Pubmed >>
  • Expansion of Capsicum annum fruit is linked to dynamic tissue-specific differential expression of miRNA and siRNA profiles.
    Taller D, Bálint J, Gyula P, Nagy T, Barta E, Baksa I, Szittya G, Taller J, Havelda Z
    PLoS One. 2018;13(7):e0200207 Pubmed >>
  • A microRNA signature and TGF-β1 response were identified as the key master regulators for spaceflight response.
    Beheshti A, Ray S, Fogle H, Berrios D, Costes SV
    PLoS One. 2018;13(7):e0199621 Pubmed >>
  • Analysis of Brachypodium miRNA targets: evidence for diverse control during stress and conservation in bioenergy crops.
    Franke KR, Schmidt SA, Park S, Jeong DH, Accerbi M, Green PJ
    BMC Genomics. 2018 Jul 20;19(1):547 Pubmed >>
  • Modeling the role of microRNA-449a in the regulation of the G2/M cell cycle checkpoint in prostate LNCaP cells under ionizing radiation.
    Gupta S, Silveira DA, Mombach JCM
    PLoS One. 2018;13(7):e0200768 Pubmed >>
  • Quantification of microRNA levels in plasma - Impact of preanalytical and analytical conditions.
    Binderup HG, Madsen JS, Heegaard NHH, Houlind K, Andersen RF, Brasen CL
    PLoS One. 2018;13(7):e0201069 Pubmed >>
  • Non-canonical functions of microRNA pathway enzymes - Drosha, DGCR8, Dicer and Ago proteins.
    Pong SK, Gullerova M
    FEBS Lett. 2018 Jul 19;: Pubmed >>
  • Diurnal oscillations in human salivary microRNA and microbial transcription: Implications for human health and disease.
    Hicks SD, Khurana N, Williams J, Dowd Greene C, Uhlig R, Middleton FA
    PLoS One. 2018;13(7):e0198288 Pubmed >>
  • Biogenesis of a 22-nt microRNA in Phaseoleae species by precursor-programmed uridylation.
    Fei Q, Yu Y, Liu L, Zhang Y, Baldrich P, Dai Q, Chen X, Meyers BC
    Proc Natl Acad Sci U S A. 2018 Jul 16;: Pubmed >>
  • Comprehensive multi-center assessment of small RNA-seq methods for quantitative miRNA profiling.
    Giraldez MD, Spengler RM, Etheridge A, Godoy PM, Barczak AJ, Srinivasan S, De Hoff PL, Tanriverdi K, Courtright A, Lu S, Khoory J, Rubio R, Baxter D, Driedonks TAP, Buermans HPJ, Nolte-'t Hoen ENM, Jiang H, Wang K, Ghiran I, Wang YE, Van Keuren-Jensen K, Freedman JE, Woodruff PG, Laurent LC, Erle DJ, Galas DJ, Tewari M
    Nat Biotechnol. 2018 Jul 16;: Pubmed >>
  • Distinct expression of the neurotoxic microRNA family let-7 in the cerebrospinal fluid of patients with Alzheimer's disease.
    Derkow K, Rössling R, Schipke C, Krüger C, Bauer J, Fähling M, Stroux A, Schott E, Ruprecht K, Peters O, Lehnardt S
    PLoS One. 2018;13(7):e0200602 Pubmed >>
  • miRAW: A deep learning-based approach to predict microRNA targets by analyzing whole microRNA transcripts.
    Pla A, Zhong X, Rayner S
    PLoS Comput Biol. 2018 Jul 13;14(7):e1006185 Pubmed >>