All the tools you need to analyse your miRNAs

Tools4miRs is a first, manually curated platform gathering at the present over 170 methods for the broadly-defined miRNA analysis. All tools in Tools4miRs are classified in the four general and seven more detailed categories. In each of the aforementioned sections user can additionally filter available methods according to his research needs, capabilities and preferences. Beside basic summary seen at first glance, the user can get detailed information concerning each tool. Tools4miRs is also a web-based target prediction meta-server incorporating user-designated target prediction methods in the analysis of user-provided data. Results generated by described meta-server can be presented in basic and extended form, while user can can additionally filter them using Union, Intersection or Consensus method. Tools4miRs is free, open-access service which will be systematically updated.
miRNA Biogenesis and Function
Concept, Design, Animation: Katharina Petsche
Tools4miRs v.1.1
Number of tools: 203
Last update: Oct. 19, 2019, 12:02 a.m.
Latest Literature
  • DNA methylation, microRNA expression profiles and their relationships with transcriptome in grass-fed and grain-fed Angus cattle rumen tissue.
    Li Y, Carrillo JA, Ding Y, He Y, Zhao C, Liu J, Zan L, Song J
    PLoS One. 2019;14(10):e0214559 Pubmed >>
  • RumimiR: a detailed microRNA database focused on ruminant species.
    Bourdon C, Bardou P, Aujean E, Le Guillou S, Tosser-Klopp G, Le Provost F
    Database (Oxford). 2019 Jan 01;2019: Pubmed >>
  • PopTargs: a database for studying population evolutionary genetics of human microRNA target sites.
    Hatlen A, Helmy M, Marco A
    Database (Oxford). 2019 Jan 01;2019: Pubmed >>
  • MirGeneDB 2.0: the metazoan microRNA complement.
    Fromm B, Domanska D, Høye E, Ovchinnikov V, Kang W, Aparicio-Puerta E, Johansen M, Flatmark K, Mathelier A, Hovig E, Hackenberg M, Friedländer MR, Peterson KJ
    Nucleic Acids Res. 2019 Oct 10;: Pubmed >>
  • Clinical significance and prognostic role of hypoxia-induced microRNA 382 in gastric adenocarcinoma.
    Seo AN, Jung Y, Jang H, Lee E, Bae HI, Son T, Kwon O, Chung HY, Yu W, Lee YM
    PLoS One. 2019;14(10):e0223608 Pubmed >>
  • Micro Manager: MicroRNA Dynamics Facilitate Correct Embryo Morphogenesis and Patterning.
    Breeze E
    Plant Cell. 2019 Oct 07;: Pubmed >>
  • Benchmark of computational methods for predicting microRNA-disease associations.
    Huang Z, Liu L, Gao Y, Shi J, Cui Q, Li J, Zhou Y
    Genome Biol. 2019 Oct 08;20(1):202 Pubmed >>
  • HRPK-1, a conserved KH-domain protein, modulates microRNA activity during Caenorhabditis elegans development.
    Li L, Veksler-Lublinsky I, Zinovyeva A
    PLoS Genet. 2019 Oct 04;15(10):e1008067 Pubmed >>
  • MicroRNA Dynamics and Functions During Arabidopsis Embryogenesis.
    Plotnikova A, Kellner MJ, Schon MA, Mosiolek M, Nodine MD
    Plant Cell. 2019 Sep 27;: Pubmed >>
  • Genetic robustness of let-7 miRNA sequence-structure pairs.
    He Q, Huang FW, Barrett C, Reidys C
    RNA. 2019 Sep 23;: Pubmed >>
  • Automatic discovery of 100-miRNA signature for cancer classification using ensemble feature selection.
    Lopez-Rincon A, Martinez-Archundia M, Martinez-Ruiz GU, Schoenhuth A, Tonda A
    BMC Bioinformatics. 2019 Sep 18;20(1):480 Pubmed >>
  • Expression of Concern: miRNA 17 Family Regulates Cisplatin-Resistant and Metastasis by Targeting TGFbetaR2 in NSCLC.
    PLOS ONE Editors
    PLoS One. 2019;14(9):e0222896 Pubmed >>
  • Global analyses of the dynamics of mammalian microRNA metabolism.
    Kingston E, Bartel D
    Genome Res. 2019 Sep 13;: Pubmed >>
  • A network embedding-based multiple information integration method for the MiRNA-disease association prediction.
    Gong Y, Niu Y, Zhang W, Li X
    BMC Bioinformatics. 2019 Sep 12;20(1):468 Pubmed >>
  • Intracellular redox potential is correlated with miRNA expression in MCF7 cells under hypoxic conditions.
    Johnston H, Dickinson P, Ivens A, Buck AH, Levine RD, Remacle F, Campbell CJ
    Proc Natl Acad Sci U S A. 2019 Sep 10;: Pubmed >>
  • Digital-resolution detection of microRNA with single-base selectivity by photonic resonator absorption microscopy.
    Canady TD, Li N, Smith LD, Lu Y, Kohli M, Smith AM, Cunningham BT
    Proc Natl Acad Sci U S A. 2019 Sep 09;: Pubmed >>
  • Unification of miRNA and isomiR research: the mirGFF3 format and the mirtop API.
    Desvignes T, Loher P, Eilbeck K, Ma J, Urgese G, Fromm B, Sydes J, Aparicio-Puerta E, Barrera V, Espín R, Thibord F, Ros XB, Londin E, Telonis AG, Ficarra E, Friedländer MR, Postlethwait JH, Rigoutsos I, Hackenberg M, Vlachos IS, Halushka MK, Pantano L
    Bioinformatics. 2019 Aug 29;: Pubmed >>
  • miRDB: an online database for prediction of functional microRNA targets.
    Chen Y, Wang X
    Nucleic Acids Res. 2019 Aug 31;: Pubmed >>
  • Scion control of miRNA abundance and tree maturity in grafted avocado.
    Ahsan MU, Hayward A, Alam M, Bandaralage JH, Topp B, Beveridge CA, Mitter N
    BMC Plant Biol. 2019 Sep 03;19(1):382 Pubmed >>
  • Serum microRNA-based prediction of responsiveness to eribulin in metastatic breast cancer.
    Satomi-Tsushita N, Shimomura A, Matsuzaki J, Yamamoto Y, Kawauchi J, Takizawa S, Aoki Y, Sakamoto H, Kato K, Shimizu C, Ochiya T, Tamura K
    PLoS One. 2019;14(9):e0222024 Pubmed >>