All the tools you need to analyse your miRNAs

Tools4miRs is a first, manually curated platform gathering at the present over 170 methods for the broadly-defined miRNA analysis. All tools in Tools4miRs are classified in the four general and seven more detailed categories. In each of the aforementioned sections user can additionally filter available methods according to his research needs, capabilities and preferences. Beside basic summary seen at first glance, the user can get detailed information concerning each tool. Tools4miRs is also a web-based target prediction meta-server incorporating user-designated target prediction methods in the analysis of user-provided data. Results generated by described meta-server can be presented in basic and extended form, while user can can additionally filter them using Union, Intersection or Consensus method. Tools4miRs is free, open-access service which will be systematically updated.
miRNA Biogenesis and Function
Concept, Design, Animation: Katharina Petsche
Tools4miRs v.1.1
Number of tools: 203
Last update: Aug. 20, 2019, 12:01 a.m.
Latest Literature
  • Beyond sequence homology: Cellular biology limits the potential of XIST to act as a miRNA sponge.
    Marshall EA, Stewart GL, Sage AP, Lam WL, Brown CJ
    PLoS One. 2019;14(8):e0221371 Pubmed >>
  • MicroRNA-27 inhibits adipogenic differentiation in orbital fibroblasts from patients with Graves' orbitopathy.
    Jang SY, Chae MK, Lee JH, Lee EJ, Yoon JS
    PLoS One. 2019;14(8):e0221077 Pubmed >>
  • MicroRNA-142 Is Critical for the Homeostasis and Function of Type 1 Innate Lymphoid Cells.
    Berrien-Elliott MM, Sun Y, Neal C, Ireland A, Trissal MC, Sullivan RP, Wagner JA, Leong JW, Wong P, Mah-Som AY, Wong TN, Schappe T, Keppel CR, Cortez VS, Stamatiades EG, Li MO, Colonna M, Link DC, French AR, Cooper MA, Wang WL, Boldin MP, Reddy P, Fehniger TA
    Immunity. 2019 Aug 02;: Pubmed >>
  • Graph convolution for predicting associations between miRNA and drug resistance.
    Huang YA, Hu P, Chan KCC, You ZH
    Bioinformatics. 2019 Aug 09;: Pubmed >>
  • Integrated analysis of lncRNA-miRNA-mRNA ceRNA network in squamous cell carcinoma of tongue.
    Zhou RS, Zhang EX, Sun QF, Ye ZJ, Liu JW, Zhou DH, Tang Y
    BMC Cancer. 2019 Aug 07;19(1):779 Pubmed >>
  • Silencing microRNA-330-5p increases MMP1 expression and promotes an invasive phenotype in oesophageal adenocarcinoma.
    Bibby BAS, Miranda CS, Reynolds JV, Cawthorne CJ, Maher SG
    BMC Cancer. 2019 Aug 07;19(1):784 Pubmed >>
  • Whole blood microRNA expression associated with stroke: Results from the Framingham Heart Study.
    Salinas J, Lin H, Aparico HJ, Huan T, Liu C, Rong J, Beiser A, Himali JJ, Freedman JE, Larson MG, Rosand J, Soreq H, Levy D, Seshadri S
    PLoS One. 2019;14(8):e0219261 Pubmed >>
  • Identification of murine gammaherpesvirus 68 miRNA-mRNA hybrids reveals miRNA target conservation among gammaherpesviruses including host translation and protein modification machinery.
    Bullard WL, Kara M, Gay LA, Sethuraman S, Wang Y, Nirmalan S, Esemenli A, Feswick A, Hoffman BA, Renne R, Tibbetts SA
    PLoS Pathog. 2019 Aug;15(8):e1007843 Pubmed >>
  • Correction to: Regulation of terpenoid biosynthesis by miRNA in Persicaria minor induced by Fusarium oxysporum.
    Samad AFA, Rahnamaie-Tajadod R, Sajad M, Jani J, Murad AMA, Noor NM, Ismail I
    BMC Genomics. 2019 08 01;20(1):627 Pubmed >>
  • The genome-wide impact of cadmium on microRNA and mRNA expression in contrasting Cd responsive wheat genotypes.
    Zhou M, Zheng S, Liu R, Lu L, Zhang C, Zhang L, Yant L, Wu Y
    BMC Genomics. 2019 Jul 29;20(1):615 Pubmed >>
  • MicroRNA-1275 inhibits cell migration and invasion in gastric cancer by regulating vimentin and E-cadherin via JAZF1.
    Mei JW, Yang ZY, Xiang HG, Bao R, Ye YY, Ren T, Wang XF, Shu YJ
    BMC Cancer. 2019 Jul 29;19(1):740 Pubmed >>
  • Structural Basis for Target-Directed MicroRNA Degradation.
    Sheu-Gruttadauria J, Pawlica P, Klum SM, Wang S, Yario TA, Schirle Oakdale NT, Steitz JA, MacRae IJ
    Mol Cell. 2019 Jul 13;: Pubmed >>
  • microRNA-21 promotes breast cancer proliferation and metastasis by targeting LZTFL1.
    Wang H, Tan Z, Hu H, Liu H, Wu T, Zheng C, Wang X, Luo Z, Wang J, Liu S, Lu Z, Tu J
    BMC Cancer. 2019 Jul 27;19(1):738 Pubmed >>
  • Prediction and interpretation of miRNA-disease associations based on miRNA target genes using canonical correlation analysis.
    Chen H, Zhang Z, Feng D
    BMC Bioinformatics. 2019 Jul 25;20(1):404 Pubmed >>
  • Time-Resolved Small RNA Sequencing Unravels the Molecular Principles of MicroRNA Homeostasis.
    Reichholf B, Herzog VA, Fasching N, Manzenreither RA, Sowemimo I, Ameres SL
    Mol Cell. 2019 Jul 09;: Pubmed >>
  • Correction: Differences in the miRNA signatures of chronic musculoskeletal pain patients from neuropathic or nociceptive origins.
    PLOS ONE Staff
    PLoS One. 2019;14(7):e0220486 Pubmed >>
  • Ensemble of decision tree reveals potential miRNA-disease associations.
    Chen X, Zhu CC, Yin J
    PLoS Comput Biol. 2019 Jul 22;15(7):e1007209 Pubmed >>
  • Profiling microRNA expression in murine bone healing and non-union formation: Role of miR-140 during the early stage of bone healing.
    Orth M, Scheuer C, Backes C, Keller A, Rollmann MF, Braun BJ, Ludwig N, Meese E, Pohlemann T, Laschke MW, Menger MD, Histing T
    PLoS One. 2019;14(7):e0218395 Pubmed >>
  • Effects of short-time exposure to atrazine on miRNA expression profiles in the gonad of common carp (Cyprinus carpio).
    Wang F, Yang QW, Zhao WJ, Du QY, Chang ZJ
    BMC Genomics. 2019 Jul 17;20(1):587 Pubmed >>
  • miRFA: an automated pipeline for microRNA functional analysis with correlation support from TCGA and TCPA expression data in pancreatic cancer.
    Borgmästars E, de Weerd HA, Lubovac-Pilav Z, Sund M
    BMC Bioinformatics. 2019 Jul 16;20(1):393 Pubmed >>