All the tools you need to analyse your miRNAs

Overview
Tools4miRs is a first, manually curated platform gathering at the present over 170 methods for the broadly-defined miRNA analysis. All tools in Tools4miRs are classified in the four general and seven more detailed categories. In each of the aforementioned sections user can additionally filter available methods according to his research needs, capabilities and preferences. Beside basic summary seen at first glance, the user can get detailed information concerning each tool. Tools4miRs is also a web-based target prediction meta-server incorporating user-designated target prediction methods in the analysis of user-provided data. Results generated by described meta-server can be presented in basic and extended form, while user can can additionally filter them using Union, Intersection or Consensus method. Tools4miRs is free, open-access service which will be systematically updated.
miRNA Biogenesis and Function
Concept, Design, Animation: Katharina Petsche
Statistics
Tools4miRs v.1.1
Number of tools: 201
Last update: Nov. 17, 2018, 12:01 a.m.
Latest Literature
  • Mapping the Pax6 3' untranslated region microRNA regulatory landscape.
    Ryan BC, Lowe K, Hanson L, Gil T, Braun L, Howard PL, Chow RL
    BMC Genomics. 2018 Nov 15;19(1):820 Pubmed >>
  • MicroRNA profiling analysis of developing berries for 'Kyoho' and its early-ripening mutant during berry ripening.
    Guo DL, Li Q, Lv WQ, Zhang GH, Yu YH
    BMC Plant Biol. 2018 Nov 16;18(1):285 Pubmed >>
  • Botulinum toxin A-induced muscle paralysis stimulates Hdac4 and differential miRNA expression.
    Worton LE, Gardiner EM, Kwon RY, Downey LM, Ausk BJ, Bain SD, Gross TS
    PLoS One. 2018;13(11):e0207354 Pubmed >>
  • miRBase: from microRNA sequences to function.
    Kozomara A, Birgaoanu M, Griffiths-Jones S
    Nucleic Acids Res. 2018 Nov 13;: Pubmed >>
  • Comparative mRNA and miRNA transcriptome analysis of a mouse model of IGFIR-driven lung cancer.
    Jones RA, Franks SE, Moorehead RA
    PLoS One. 2018;13(11):e0206948 Pubmed >>
  • Integration of genetics and miRNA-target gene network identified disease biology implicated in tissue specificity.
    Sakaue S, Hirata J, Maeda Y, Kawakami E, Nii T, Kishikawa T, Ishigaki K, Terao C, Suzuki K, Akiyama M, Suita N, Masuda T, Ogawa K, Yamamoto K, Saeki Y, Matsushita M, Yoshimura M, Matsuoka H, Ikari K, Taniguchi A, Yamanaka H, Kawaji H, Lassmann T, Itoh M, Yoshitomi H, Ito H, Ohmura K, R Forrest AR, Hayashizaki Y, Carninci P, Kumanogoh A, Kamatani Y, de Hoon M, Yamamoto K, Okada Y
    Nucleic Acids Res. 2018 Nov 08;: Pubmed >>
  • Alterations in exosomal miRNA profile upon epithelial-mesenchymal transition in human lung cancer cell lines.
    Tang YT, Huang YY, Li JH, Qin SH, Xu Y, An TX, Liu CC, Wang Q, Zheng L
    BMC Genomics. 2018 Nov 06;19(1):802 Pubmed >>
  • Polypyrimidine tract-binding protein blocks miRNA-124 biogenesis to enforce its neuronal-specific expression in the mouse.
    Yeom KH, Mitchell S, Linares AJ, Zheng S, Lin CH, Wang XJ, Hoffmann A, Black DL
    Proc Natl Acad Sci U S A. 2018 Nov 06;: Pubmed >>
  • Circulating miRNA measurements are reflective of cholesterol-based changes in rainbow trout (Oncorhynchus mykiss).
    Zhu T, Corraze G, Plagnes-Juan E, Skiba-Cassy S
    PLoS One. 2018;13(11):e0206727 Pubmed >>
  • Profiling the miRNA-mRNA-lncRNA interaction network in MSC osteoblast differentiation induced by (+)-cholesten-3-one.
    Hou Q, Huang Y, Liu Y, Luo Y, Wang B, Deng R, Zhang S, Liu F, Chen D
    BMC Genomics. 2018 Oct 29;19(1):783 Pubmed >>
  • microRNA-378 promotes autophagy and inhibits apoptosis in skeletal muscle.
    Li Y, Jiang J, Liu W, Wang H, Zhao L, Liu S, Li P, Zhang S, Sun C, Wu Y, Yu S, Li X, Zhang H, Qian H, Zhang D, Guo F, Zhai Q, Ding Q, Wang L, Ying H
    Proc Natl Acad Sci U S A. 2018 Oct 29;: Pubmed >>
  • TransmiR v2.0: an updated transcription factor-microRNA regulation database.
    Tong Z, Cui Q, Wang J, Zhou Y
    Nucleic Acids Res. 2018 Oct 29;: Pubmed >>
  • IGF2BP1 promotes SRF-dependent transcription in cancer in a m6A- and miRNA-dependent manner.
    Müller S, Glaß M, Singh AK, Haase J, Bley N, Fuchs T, Lederer M, Dahl A, Huang H, Chen J, Posern G, Hüttelmaier S
    Nucleic Acids Res. 2018 Oct 29;: Pubmed >>
  • The role of NF-κB and miRNA in oral cancer and cancer stem cells with or without HPV16 infection.
    Bano N, Yadav M, Mohania D, Das BC
    PLoS One. 2018;13(10):e0205518 Pubmed >>
  • Ascophyllum nodosum extract mitigates salinity stress in Arabidopsis thaliana by modulating the expression of miRNA involved in stress tolerance and nutrient acquisition.
    Shukla PS, Borza T, Critchley AT, Hiltz D, Norrie J, Prithiviraj B
    PLoS One. 2018;13(10):e0206221 Pubmed >>
  • HMDD v3.0: a database for experimentally supported human microRNA-disease associations.
    Huang Z, Shi J, Gao Y, Cui C, Zhang S, Li J, Zhou Y, Cui Q
    Nucleic Acids Res. 2018 Oct 26;: Pubmed >>
  • Developing a panel of biomarkers and miRNA in patients with myocardial infarction for early intervention strategies of heart failure in West Virginian population.
    Lakhani HV, Khanal T, Gabi A, Yousef G, Alam MB, Sharma D, Aljoudi H, Puri N, Thompson E, Shapiro JI, Sodhi K
    PLoS One. 2018;13(10):e0205329 Pubmed >>
  • The microRNA-29/PGC1α regulatory axis is critical for metabolic control of cardiac function.
    Caravia XM, Fanjul V, Oliver E, Roiz-Valle D, Morán-Álvarez A, Desdín-Micó G, Mittelbrunn M, Cabo R, Vega JA, Rodríguez F, Fueyo A, Gómez M, Lobo-González M, Bueno H, Velasco G, Freije JMP, Andrés V, Ibáñez B, Ugalde AP, López-Otín C
    PLoS Biol. 2018 Oct 22;16(10):e2006247 Pubmed >>
  • Major domestication-related phenotypes in indica rice are due to loss of miRNA-mediated laccase silencing.
    Swetha C, Basu D, Pachamuthu K, Tirumalai V, Nair A, Prasad M, Shivaprasad PV
    Plant Cell. 2018 Oct 19;: Pubmed >>
  • Post-transcriptional control of miRNA biogenesis.
    Michlewski GP, Caceres JF
    RNA. 2018 Oct 17;: Pubmed >>