All the tools you need to analyse your miRNAs

Overview
Tools4miRs is a first, manually curated platform gathering at the present over 170 methods for the broadly-defined miRNA analysis. All tools in Tools4miRs are classified in the four general and seven more detailed categories. In each of the aforementioned sections user can additionally filter available methods according to his research needs, capabilities and preferences. Beside basic summary seen at first glance, the user can get detailed information concerning each tool. Tools4miRs is also a web-based target prediction meta-server incorporating user-designated target prediction methods in the analysis of user-provided data. Results generated by described meta-server can be presented in basic and extended form, while user can can additionally filter them using Union, Intersection or Consensus method. Tools4miRs is free, open-access service which will be systematically updated.
miRNA Biogenesis and Function
Concept, Design, Animation: Katharina Petsche
Statistics
Tools4miRs v.1.1
Number of tools: 203
Last update: May 18, 2019, midnight
Latest Literature
  • Bioinformatics Resource Manager: a systems biology web tool for microRNA and omics data integration.
    Brown J, Phillips AR, Lewis DA, Mans MA, Chang Y, Tanguay RL, Peterson ES, Waters KM, Tilton SC
    BMC Bioinformatics. 2019 May 17;20(1):255 Pubmed >>
  • In silico genome-wide miRNA-QTL-SNPs analyses identify a functional SNP associated with mastitis in Holsteins.
    Jiang Q, Zhao H, Li R, Zhang Y, Liu Y, Wang J, Wang X, Ju Z, Liu W, Hou M, Huang J
    BMC Genet. 2019 May 16;20(1):46 Pubmed >>
  • CORRECTION: A MicroRNA Superfamily Regulates Nucleotide Binding Site-Leucine-Rich Repeats and Other mRNAs.
    Shivaprasad PV, Chen HM, Patel K, Bond DM, Santos BACM, Baulcombe DC
    Plant Cell. 2019 May 13;: Pubmed >>
  • Selected serum microRNA, abdominal aortic calcification and risk of osteoporotic fracture.
    Pickering ME, Millet M, Rousseau JC, Croset M, Szulc P, Borel O, Sornay Rendu E, Chapurlat R
    PLoS One. 2019;14(5):e0216947 Pubmed >>
  • anamiR: integrated analysis of MicroRNA and gene expression profiling.
    Wang TT, Lee CY, Lai LC, Tsai MH, Lu TP, Chuang EY
    BMC Bioinformatics. 2019 May 14;20(1):239 Pubmed >>
  • Interplay between proinflammatory cytokines, miRNA, and tissue lesions in Anisakis-infected Sprague-Dawley rats.
    Hrabar J, Trumbić Ž, Bočina I, Bušelić I, Vrbatović A, Mladineo I
    PLoS Negl Trop Dis. 2019 May 15;13(5):e0007397 Pubmed >>
  • miRspongeR: an R/Bioconductor package for the identification and analysis of miRNA sponge interaction networks and modules.
    Zhang J, Liu L, Xu T, Xie Y, Zhao C, Li J, Le TD
    BMC Bioinformatics. 2019 May 10;20(1):235 Pubmed >>
  • Integrated analysis of mRNA-seq and miRNA-seq in calyx abscission zone of Korla fragrant pear involved in calyx persistence.
    Ma L, Zhou L, Quan S, Xu H, Yang J, Niu J
    BMC Plant Biol. 2019 May 09;19(1):192 Pubmed >>
  • Impact of a patient-derived hepatitis C viral RNA genome with a mutated microRNA binding site.
    Mata M, Neben S, Majzoub K, Carette J, Ramanathan M, Khavari PA, Sarnow P
    PLoS Pathog. 2019 May 10;15(5):e1007467 Pubmed >>
  • MicroRNA therapy stimulates uncontrolled cardiac repair after myocardial infarction in pigs.
    Gabisonia K, Prosdocimo G, Aquaro GD, Carlucci L, Zentilin L, Secco I, Ali H, Braga L, Gorgodze N, Bernini F, Burchielli S, Collesi C, Zandonà L, Sinagra G, Piacenti M, Zacchigna S, Bussani R, Recchia FA, Giacca M
    Nature. 2019 May 08;: Pubmed >>
  • MISIM v2.0: a web server for inferring microRNA functional similarity based on microRNA-disease associations.
    Li J, Zhang S, Wan Y, Zhao Y, Shi J, Zhou Y, Cui Q
    Nucleic Acids Res. 2019 May 09;: Pubmed >>
  • mirTime: Identifying Condition-Specific Targets of MicroRNA in Time-series Transcript Data using Gaussian Process Model and Spherical Vector Clustering.
    Kang H, Ahn H, Jo K, Oh M, Kim S
    Bioinformatics. 2019 May 09;: Pubmed >>
  • microRNA-944 overexpression is a biomarker for poor prognosis of advanced cervical cancer.
    Park S, Kim J, Eom K, Oh S, Kim S, Kim G, Ahn S, Park KH, Chung D, Lee H
    BMC Cancer. 2019 May 06;19(1):419 Pubmed >>
  • High serum CRP influences myocardial miRNA profiles in ischemia-reperfusion injury of rat heart.
    Kim EN, Kim CJ, Kim SR, Song JA, Choe H, Kim KB, Choi JS, Oh SJ
    PLoS One. 2019;14(5):e0216610 Pubmed >>
  • Erratum: Deep experimental profiling of microRNA diversity, deployment, and evolution across the Drosophila genus.
    Mohammed J, Flynt AS, Panzarino AM, Mondal MMH, DeCruz M, Siepel A, Lai EC
    Genome Res. 2019 May;29(5):881 Pubmed >>
  • Adaptive boosting-based computational model for predicting potential miRNA-disease associations.
    Zhao Y, Chen X, Yin J
    Bioinformatics. 2019 Apr 30;: Pubmed >>
  • METTL1 Promotes let-7 MicroRNA Processing via m7G Methylation.
    Pandolfini L, Barbieri I, Bannister AJ, Hendrick A, Andrews B, Webster N, Murat P, Mach P, Brandi R, Robson SC, Migliori V, Alendar A, d'Onofrio M, Balasubramanian S, Kouzarides T
    Mol Cell. 2019 Apr 19;: Pubmed >>
  • Comprehensive analysis of miRNA and protein profiles within exosomes derived from canine lymphoid tumour cell lines.
    Asada H, Tomiyasu H, Uchikai T, Ishihara G, Goto-Koshino Y, Ohno K, Tsujimoto H
    PLoS One. 2019;14(4):e0208567 Pubmed >>
  • Nanoscale imaging reveals miRNA-mediated control of functional states of dendritic spines.
    Park I, Kim HJ, Kim Y, Hwang HS, Kasai H, Kim JH, Park JW
    Proc Natl Acad Sci U S A. 2019 Apr 24;: Pubmed >>
  • RIP-Chip analysis supports different roles for AGO2 and GW182 proteins in recruiting and processing microRNA targets.
    Perconti G, Rubino P, Contino F, Bivona S, Bertolazzi G, Tumminello M, Feo S, Giallongo A, Coronnello C
    BMC Bioinformatics. 2019 Apr 18;20(Suppl 4):120 Pubmed >>