All the tools you need to analyse your miRNAs

Overview
Tools4miRs is a first, manually curated platform gathering at the present over 170 methods for the broadly-defined miRNA analysis. All tools in Tools4miRs are classified in the four general and seven more detailed categories. In each of the aforementioned sections user can additionally filter available methods according to his research needs, capabilities and preferences. Beside basic summary seen at first glance, the user can get detailed information concerning each tool. Tools4miRs is also a web-based target prediction meta-server incorporating user-designated target prediction methods in the analysis of user-provided data. Results generated by described meta-server can be presented in basic and extended form, while user can can additionally filter them using Union, Intersection or Consensus method. Tools4miRs is free, open-access service which will be systematically updated.
miRNA Biogenesis and Function
Concept, Design, Animation: Katharina Petsche
Statistics
Tools4miRs v.1.1
Number of tools: 201
Last update: Jan. 17, 2019, 12:01 a.m.
Latest Literature
  • MicroRNA expression profile of HCT-8 cells in the early phase of Cryptosporidium parvum infection.
    Wang C, Liu L, Zhu H, Zhang L, Wang R, Zhang Z, Huang J, Zhang S, Jian F, Ning C, Zhang L
    BMC Genomics. 2019 Jan 14;20(1):37 Pubmed >>
  • Polyomavirus BK, BKV microRNA, and urinary neutrophil gelatinase-associated lipocalin can be used as potential biomarkers of lupus nephritis.
    Li YJ, Wu HH, Liu SH, Tu KH, Lee CC, Hsu HH, Chang MY, Yu KH, Chen W, Tian YC
    PLoS One. 2019;14(1):e0210633 Pubmed >>
  • Development of a miRNA-seq based prognostic signature in lung adenocarcinoma.
    Siriwardhana C, Khadka VS, Chen JJ, Deng Y
    BMC Cancer. 2019 Jan 08;19(1):34 Pubmed >>
  • Ago HITS-CLIP expands microRNA-mRNA interactions in nucleus and cytoplasm of gastric cancer cells.
    Zhang X, Shen B, Cui Y
    BMC Cancer. 2019 Jan 08;19(1):29 Pubmed >>
  • MicroRNA signature constituted of miR-30d, miR-93, and miR-181b is a promising prognostic marker in primary central nervous system lymphoma.
    Takashima Y, Kawaguchi A, Iwadate Y, Hondoh H, Fukai J, Kajiwara K, Hayano A, Yamanaka R
    PLoS One. 2019;14(1):e0210400 Pubmed >>
  • Distinct shed microvesicle and exosome microRNA signatures reveal diagnostic markers for colorectal cancer.
    Chen M, Xu R, Rai A, Suwakulsiri W, Izumikawa K, Ishikawa H, Greening DW, Takahashi N, Simpson RJ
    PLoS One. 2019;14(1):e0210003 Pubmed >>
  • Bias-minimized quantification of microRNA reveals widespread alternative processing and 3' end modification.
    Kim H, Kim J, Kim K, Chang H, You K, Kim VN
    Nucleic Acids Res. 2019 Jan 03;: Pubmed >>
  • Genotype- and tissue-specific miRNA profiles and their targets in three alfalfa (Medicago sativa L) genotypes.
    Pokoo R, Ren S, Wang Q, Motes CM, Hernandez TD, Ahmadi S, Monteros MJ, Zheng Y, Sunkar R
    BMC Genomics. 2018 Dec 31;19(Suppl 10):913 Pubmed >>
  • miRBaseConverter: an R/Bioconductor package for converting and retrieving miRNA name, accession, sequence and family information in different versions of miRBase.
    Xu T, Su N, Liu L, Zhang J, Wang H, Zhang W, Gui J, Yu K, Li J, Le TD
    BMC Bioinformatics. 2018 Dec 31;19(Suppl 19):514 Pubmed >>
  • FKL-Spa-LapRLS: an accurate method for identifying human microRNA-disease association.
    Jiang L, Xiao Y, Ding Y, Tang J, Guo F
    BMC Genomics. 2018 Dec 31;19(Suppl 10):911 Pubmed >>
  • A genetically engineered microRNA-34a prodrug demonstrates anti-tumor activity in a canine model of osteosarcoma.
    Alegre F, Ormonde AR, Snider KM, Woolard K, Yu AM, Wittenburg LA
    PLoS One. 2018;13(12):e0209941 Pubmed >>
  • Characterization of miRNA profiles in the mammary tissue of dairy cattle in response to heat stress.
    Li Q, Yang C, Du J, Zhang B, He Y, Hu Q, Li M, Zhang Y, Wang C, Zhong J
    BMC Genomics. 2018 Dec 28;19(1):975 Pubmed >>
  • MicroRNA-8073: Tumor suppressor and potential therapeutic treatment.
    Mizoguchi A, Takayama A, Arai T, Kawauchi J, Sudo H
    PLoS One. 2018;13(12):e0209750 Pubmed >>
  • Circ_Lrp6, a Circular RNA Enriched in Vascular Smooth Muscle Cells, Acts as a Sponge Regulating miRNA-145 Function.
    Hall IF, Climent-Salarich M, Quintavalle M, Farina FM, Schorn T, Zani SM, Carullo P, Kunderfranco P, Civilini E, Condorelli G, Elia L
    Circ Res. 2018 Nov 30;: Pubmed >>
  • Atherosclerotic Conditions Promote the Packaging of Functional MicroRNA-92a-3p into Endothelial Microvesicles.
    Liu Y, Li Q, Hosen MR, Zietzer A, Flender A, Levermann P, Schmitz T, Frühwald DJ, Goody PR, Nickenig G, Werner N, Jansen F
    Circ Res. 2018 Dec 12;: Pubmed >>
  • MicroRNA dysregulational synergistic network: discovering microRNA dysregulatory modules across subtypes in non-small cell lung cancers.
    Tran N, Abhyankar V, Nguyen K, Weidanz J, Gao J
    BMC Bioinformatics. 2018 Dec 21;19(Suppl 20):504 Pubmed >>
  • Kinetics of the chromosome 14 microRNA cluster ortholog and its potential role during placental development in the pregnant mare.
    Dini P, Daels P, Loux SC, Esteller-Vico A, Carossino M, Scoggin KE, Ball BA
    BMC Genomics. 2018 Dec 20;19(1):954 Pubmed >>
  • A microRNA cluster in the Fragile-X region expressed during spermatogenesis targets FMR1.
    Ramaiah M, Tan K, Plank TM, Song HW, Dumdie JN, Jones S, Shum EY, Sheridan SD, Peterson KJ, Gromoll J, Haggarty SJ, Cook-Andersen H, Wilkinson MF
    EMBO Rep. 2018 Dec 20;: Pubmed >>
  • Molecular Basis for the Single-Nucleotide Precision of Primary microRNA Processing.
    Kwon SC, Baek SC, Choi YG, Yang J, Lee YS, Woo JS, Kim VN
    Mol Cell. 2018 Dec 07;: Pubmed >>
  • regQTLs: Single nucleotide polymorphisms that modulate microRNA regulation of gene expression in tumors.
    Wilk G, Braun R
    PLoS Genet. 2018 Dec 17;14(12):e1007837 Pubmed >>