All the tools you need to analyse your miRNAs

Overview
Tools4miRs is a first, manually curated platform gathering at the present over 170 methods for the broadly-defined miRNA analysis. All tools in Tools4miRs are classified in the four general and seven more detailed categories. In each of the aforementioned sections user can additionally filter available methods according to his research needs, capabilities and preferences. Beside basic summary seen at first glance, the user can get detailed information concerning each tool. Tools4miRs is also a web-based target prediction meta-server incorporating user-designated target prediction methods in the analysis of user-provided data. Results generated by described meta-server can be presented in basic and extended form, while user can can additionally filter them using Union, Intersection or Consensus method. Tools4miRs is free, open-access service which will be systematically updated.
miRNA Biogenesis and Function
Concept, Design, Animation: Katharina Petsche
Statistics
Tools4miRs v.1.1
Number of tools: 201
Last update: Feb. 23, 2019, midnight
Latest Literature
  • Regulation of MicroRNA Machinery and Development by Interspecies S-Nitrosylation.
    Seth P, Hsieh PN, Jamal S, Wang L, Gygi SP, Jain MK, Coller J, Stamler JS
    Cell. 2019 Feb 21;176(5):1014-1025.e12 Pubmed >>
  • A unique insight into the MiRNA profile during genital chlamydial infection.
    Benyeogor I, Simoneaux T, Wu Y, Lundy S, George Z, Ryans K, McKeithen D, Pais R, Ellerson D, Lorenz WW, Omosun T, Thompson W, Eko FO, Black CM, Blas-Machado U, Igietseme JU, He Q, Omosun Y
    BMC Genomics. 2019 Feb 18;20(1):143 Pubmed >>
  • Inferring the regulatory network of the miRNA-mediated response to biotic and abiotic stress in melon.
    Sanz-Carbonell A, Marques MC, Bustamante A, Fares MA, Rodrigo G, Gomez G
    BMC Plant Biol. 2019 Feb 18;19(1):78 Pubmed >>
  • Identification of whole blood mRNA and microRNA biomarkers of tissue damage and immune function resulting from amphetamine exposure or heat stroke in adult male rats.
    Camacho L, Silva CS, Hanig JP, Schleimer RP, George NI, Bowyer JF
    PLoS One. 2019;14(2):e0210273 Pubmed >>
  • Alterations in tissue microRNA after heat stress in the conscious rat: potential biomarkers of organ-specific injury.
    Permenter MG, McDyre BC, Ippolito DL, Stallings JD
    BMC Genomics. 2019 Feb 15;20(1):141 Pubmed >>
  • Anti-inflammatory microRNA-146a protects mice from diet-induced metabolic disease.
    Runtsch MC, Nelson MC, Lee SH, Voth W, Alexander M, Hu R, Wallace J, Petersen C, Panic V, Villanueva CJ, Evason KJ, Bauer KM, Mosbruger T, Boudina S, Bronner M, Round JL, Drummond MJ, O'Connell RM
    PLoS Genet. 2019 Feb 15;15(2):e1007970 Pubmed >>
  • PmiRDiscVali: an integrated pipeline for plant microRNA discovery and validation.
    Yu D, Wan Y, Ito H, Ma X, Xie T, Wang T, Shao C, Meng Y
    BMC Genomics. 2019 Feb 13;20(1):133 Pubmed >>
  • Differential miRNA Loading Underpins Dual Harmful and Protective Roles for Extracellular Vesicles in Atherogenesis.
    Blaser MC, Aikawa E
    Circ Res. 2019 Feb 15;124(4):467-469 Pubmed >>
  • EBV miRNA expression profiles in different infection stages: A prospective cohort study.
    Hartung A, Makarewicz O, Egerer R, Karrasch M, Klink A, Sauerbrei A, Kentouche K, Pletz MW
    PLoS One. 2019;14(2):e0212027 Pubmed >>
  • miRNA expression profiles and molecular networks in resting and LPS-activated BV-2 microglia-Effect of cannabinoids.
    Juknat A, Gao F, Coppola G, Vogel Z, Kozela E
    PLoS One. 2019;14(2):e0212039 Pubmed >>
  • Systematic review and meta-analysis of prognostic microRNA biomarkers for survival outcome in nasopharyngeal carcinoma.
    Sabarimurugan S, Kumarasamy C, Baxi S, Devi A, Jayaraj R
    PLoS One. 2019;14(2):e0209760 Pubmed >>
  • A genetic variant associated with multiple sclerosis inversely affects the expression of CD58 and microRNA-548ac from the same gene.
    Hecker M, Boxberger N, Illner N, Fitzner B, Schröder I, Winkelmann A, Dudesek A, Meister S, Koczan D, Lorenz P, Thiesen HJ, Zettl UK
    PLoS Genet. 2019 Feb 07;15(2):e1007961 Pubmed >>
  • MiRNA-891a-5p mediates HIV-1 Tat and KSHV Orf-K1 synergistic induction of angiogenesis by activating NF-κB signaling.
    Yao S, Hu M, Hao T, Li W, Xue X, Xue M, Zhu X, Zhou F, Qin D, Yan Q, Zhu J, Gao SJ, Lu C
    Nucleic Acids Res. 2019 Feb 06;: Pubmed >>
  • Characterisation and validation of Mel38; A multi-tissue microRNA signature of cutaneous melanoma.
    Van Laar R, Lincoln M, Fereday S
    PLoS One. 2019;14(2):e0211504 Pubmed >>
  • The heterogeneity of plasma miRNA profiles in hepatocellular carcinoma patients and the exploration of diagnostic circulating miRNAs for hepatocellular carcinoma.
    Bai X, Liu Z, Shao X, Wang D, Dong E, Wang Y, Wu CI, Yuan Y, Lu X, Li C
    PLoS One. 2019;14(2):e0211581 Pubmed >>
  • The Protein Phosphatase 4 Complex Functions in miRNA Biogenesis in Arabidopsis.
    Hammond R
    Plant Cell. 2019 Feb 01;: Pubmed >>
  • Selection of three miRNA signatures with prognostic value in non-M3 acute myeloid leukemia.
    Xue Y, Ge Y, Kang M, Wu C, Wang Y, Rong L, Fang Y
    BMC Cancer. 2019 Jan 30;19(1):109 Pubmed >>
  • Comparison of splenocyte microRNA expression profiles of pigs during acute and chronic toxoplasmosis.
    Hou Z, Liu D, Su S, Wang L, Zhao Z, Ma Y, Li Q, Jia C, Xu J, Zhou Y, Tao J
    BMC Genomics. 2019 Jan 30;20(1):97 Pubmed >>
  • MiRNA detection in cervical exfoliated cells for missed high-grade lesions in women with LSIL/CIN1 diagnosis after colposcopy-guided biopsy.
    Ye J, Cheng XD, Cheng B, Cheng YF, Chen XJ, Lu WG
    BMC Cancer. 2019 Jan 30;19(1):112 Pubmed >>
  • Characterization of a novel microRNA, miR-188, elevated in serum of muscular dystrophy dog model.
    Shibasaki H, Imamura M, Arima S, Tanihata J, Kuraoka M, Matsuzaka Y, Uchiumi F, Tanuma SI, Takeda S
    PLoS One. 2019;14(1):e0211597 Pubmed >>