All the tools you need to analyse your miRNAs

Overview
Tools4miRs is a first, manually curated platform gathering at the present over 170 methods for the broadly-defined miRNA analysis. All tools in Tools4miRs are classified in the four general and seven more detailed categories. In each of the aforementioned sections user can additionally filter available methods according to his research needs, capabilities and preferences. Beside basic summary seen at first glance, the user can get detailed information concerning each tool. Tools4miRs is also a web-based target prediction meta-server incorporating user-designated target prediction methods in the analysis of user-provided data. Results generated by described meta-server can be presented in basic and extended form, while user can can additionally filter them using Union, Intersection or Consensus method. Tools4miRs is free, open-access service which will be systematically updated.
miRNA Biogenesis and Function
Concept, Design, Animation: Katharina Petsche
Statistics
Tools4miRs v.1.1
Number of tools: 203
Last update: July 20, 2019, 12:01 a.m.
Latest Literature
  • Profiling microRNA expression in murine bone healing and non-union formation: Role of miR-140 during the early stage of bone healing.
    Orth M, Scheuer C, Backes C, Keller A, Rollmann MF, Braun BJ, Ludwig N, Meese E, Pohlemann T, Laschke MW, Menger MD, Histing T
    PLoS One. 2019;14(7):e0218395 Pubmed >>
  • Effects of short-time exposure to atrazine on miRNA expression profiles in the gonad of common carp (Cyprinus carpio).
    Wang F, Yang QW, Zhao WJ, Du QY, Chang ZJ
    BMC Genomics. 2019 Jul 17;20(1):587 Pubmed >>
  • miRFA: an automated pipeline for microRNA functional analysis with correlation support from TCGA and TCPA expression data in pancreatic cancer.
    Borgmästars E, de Weerd HA, Lubovac-Pilav Z, Sund M
    BMC Bioinformatics. 2019 Jul 16;20(1):393 Pubmed >>
  • Regulation of terpenoid biosynthesis by miRNA in Persicaria minor induced by Fusarium oxysporum.
    Samad AFA, Rahnamaie-Tajadod R, Sajad M, Jani J, Murad AMA, Noor NM, Ismail I
    BMC Genomics. 2019 Jul 16;20(1):586 Pubmed >>
  • Co-expression analysis reveals dysregulated miRNAs and miRNA-mRNA interactions in the development of contrast-induced acute kidney injury.
    Wang Z, Bao W, Zou X, Tan P, Chen H, Lai C, Liu D, Luo Z, Huang M
    PLoS One. 2019;14(7):e0218574 Pubmed >>
  • Sequestration of microRNA-mediated target repression by the Ago2-associated RNA binding protein FAM120A.
    Kelly TJ, Suzuki H, Zamudio JR, Suzuki M, Sharp P
    RNA. 2019 Jul 09;: Pubmed >>
  • Immune-regulatory microRNA expression levels within circulating extracellular vesicles correspond with the appearance of local symptoms after seasonal flu vaccination.
    Miyashita Y, Ishikawa K, Fukushima Y, Kouwaki T, Nakamura K, Oshiumi H
    PLoS One. 2019;14(7):e0219510 Pubmed >>
  • DNA nanotechnology approaches for microRNA detection and diagnosis.
    Chandrasekaran AR, Punnoose JA, Zhou L, Dey P, Dey BK, Halvorsen K
    Nucleic Acids Res. 2019 Jul 09;: Pubmed >>
  • Differences in the miRNA signatures of chronic musculoskeletal pain patients from neuropathic or nociceptive origins.
    Dayer CF, Luthi F, Le Carré J, Vuistiner P, Terrier P, Benaim C, Giacobino JP, Léger B
    PLoS One. 2019;14(7):e0219311 Pubmed >>
  • Cold storage conditions modify microRNA expressions for platelet transfusion.
    Mukai N, Nakayama Y, Ishi S, Murakami T, Ogawa S, Kageyama K, Murakami S, Sasada Y, Yoshioka J, Nakajima Y
    PLoS One. 2019;14(7):e0218797 Pubmed >>
  • The E3 ligase TRIM56 is a host restriction factor of Zika virus and depends on its RNA-binding activity but not miRNA regulation, for antiviral function.
    Yang D, Li NL, Wei D, Liu B, Guo F, Elbahesh H, Zhang Y, Zhou Z, Chen GY, Li K
    PLoS Negl Trop Dis. 2019 Jun 28;13(6):e0007537 Pubmed >>
  • Construction and analysis of degradome-dependent microRNA regulatory networks in soybean.
    Wang R, Yang Z, Fei Y, Feng J, Zhu H, Huang F, Zhang H, Huang J
    BMC Genomics. 2019 Jun 28;20(1):534 Pubmed >>
  • HDAC2-dependent miRNA signature in acute myeloid leukemia.
    Conte M, Dell'Aversana C, Sgueglia G, Carissimo A, Altucci L
    FEBS Lett. 2019 Jun 29;: Pubmed >>
  • NPCMF: Nearest Profile-based Collaborative Matrix Factorization method for predicting miRNA-disease associations.
    Gao YL, Cui Z, Liu JX, Wang J, Zheng CH
    BMC Bioinformatics. 2019 Jun 24;20(1):353 Pubmed >>
  • Integrated analysis of microRNA regulation and its interaction with mechanisms of epigenetic regulation in the etiology of systemic lupus erythematosus.
    Navarro Quiroz E, Navarro Quiroz R, Pacheco Lugo L, Aroca Martínez G, Gómez Escorcia L, Gonzalez Torres H, Cadena Bonfanti A, Marmolejo MDC, Sanchez E, Villarreal Camacho JL, Lorenzi H, Torres A, Navarro KF, Navarro Rodriguez P, Villa JL, Fernández-Ponce C
    PLoS One. 2019;14(6):e0218116 Pubmed >>
  • MepmiRDB: a medicinal plant microRNA database.
    Yu D, Lu J, Shao W, Ma X, Xie T, Ito H, Wang T, Xu M, Wang H, Meng Y
    Database (Oxford). 2019 Jan 01;2019: Pubmed >>
  • Put the Pedal to the METTL1: Adding Internal m7G Increases mRNA Translation Efficiency and Augments miRNA Processing.
    Boulias K, Greer EL
    Mol Cell. 2019 Jun 20;74(6):1105-1107 Pubmed >>
  • MicroRNA-145 Regulates the Differentiation of Adipose Stem Cells Toward Microvascular Endothelial Cells and Promotes Angiogenesis.
    Arderiu G, Peña E, Aledo R, Juan-Babot O, Crespo J, Vilahur G, Oñate B, Moscatiello F, Badimon L
    Circ Res. 2019 Jun 21;125(1):74-89 Pubmed >>
  • Highly efficient silencing of microRNA by heteroduplex oligonucleotides.
    Yoshioka K, Kunieda T, Asami Y, Guo H, Miyata H, Yoshida-Tanaka K, Sujino Y, Piao W, Kuwahara H, Nishina K, Hara RI, Nagata T, Wada T, Obika S, Yokota T
    Nucleic Acids Res. 2019 Jun 19;: Pubmed >>
  • Spliceosome disassembly factors ILP1 and NTR1 promote miRNA biogenesis in Arabidopsis thaliana.
    Wang J, Chen S, Jiang N, Li N, Wang X, Li Z, Li X, Liu H, Li L, Yang Y, Ni T, Yu C, Ma J, Zheng B, Ren G
    Nucleic Acids Res. 2019 Jun 19;: Pubmed >>