All the tools you need to analyse your miRNAs

Overview
Tools4miRs is a first, manually curated platform gathering at the present over 170 methods for the broadly-defined miRNA analysis. All tools in Tools4miRs are classified in the four general and seven more detailed categories. In each of the aforementioned sections user can additionally filter available methods according to his research needs, capabilities and preferences. Beside basic summary seen at first glance, the user can get detailed information concerning each tool. Tools4miRs is also a web-based target prediction meta-server incorporating user-designated target prediction methods in the analysis of user-provided data. Results generated by described meta-server can be presented in basic and extended form, while user can can additionally filter them using Union, Intersection or Consensus method. Tools4miRs is free, open-access service which will be systematically updated.
miRNA Biogenesis and Function
Concept, Design, Animation: Katharina Petsche
Statistics
Tools4miRs v.1.1
Number of tools: 200
Last update: Oct. 21, 2017, 12:01 a.m.
Latest Literature
  • Transcriptome assembly in Suaeda aralocaspica to reveal the distinct temporal gene/miRNA alterations between the dimorphic seeds during germination.
    Wang L, Wang HL, Yin L, Tian CY
    BMC Genomics. 2017 Oct 19;18(1):806 Pubmed >>
  • Association between a miRNA-146a polymorphism and susceptibility to head and neck squamous cell carcinoma in Chinese patients: A meta-analysis of 8 case-control studies.
    Zhang S, Hu F, Liang H, Liu Y, Yang J, Zhou W
    PLoS One. 2017;12(10):e0186609 Pubmed >>
  • MicroRNA expression analysis of feline and canine parvovirus infection in vivo (felis).
    Zhou P, Zhang X, Zeng W, Zheng Q, Hao X, Lin X, Zheng Y, Wang L, Zhang G, Li S
    PLoS One. 2017;12(10):e0185698 Pubmed >>
  • Circulating microRNA-375 as biomarker of pancreatic beta cell death and protection of beta cell mass by cytoprotective compounds.
    Song I, Roels S, Martens GA, Bouwens L
    PLoS One. 2017;12(10):e0186480 Pubmed >>
  • MicroRNA profiling of human primary macrophages exposed to dengue virus identifies miRNA-3614-5p as antiviral and regulator of ADAR1 expression.
    Diosa-Toro M, Echavarría-Consuegra L, Flipse J, Fernández GJ, Kluiver J, van den Berg A, Urcuqui-Inchima S, Smit JM
    PLoS Negl Trop Dis. 2017 Oct 18;11(10):e0005981 Pubmed >>
  • Integrated mRNA and microRNA transcriptome analyses reveal regulation of thermal acclimation in Gymnocypris przewalskii: A case study in Tibetan Schizothoracine fish.
    Zhang C, Tong C, Tian F, Zhao K
    PLoS One. 2017;12(10):e0186433 Pubmed >>
  • Design and implementation of a synthetic pre-miR switch for controlling miRNA biogenesis in mammals.
    Atanasov J, Groher F, Weigand JE, Suess B
    Nucleic Acids Res. 2017 Sep 28;: Pubmed >>
  • miRCarta: a central repository for collecting miRNA candidates.
    Backes C, Fehlmann T, Kern F, Kehl T, Lenhof HP, Meese E, Keller A
    Nucleic Acids Res. 2017 Sep 25;: Pubmed >>
  • CCmiR: A computational approach for competitive and cooperative microRNA binding prediction.
    Ding J, Li X, Hu H
    Bioinformatics. 2017 Sep 25;: Pubmed >>
  • OncomiR: An online resource for exploring pan-cancer microRNA dysregulation.
    Wong NW, Chen Y, Chen S, Wang X
    Bioinformatics. 2017 Oct 03;: Pubmed >>
  • Genome-wide pre-miRNA discovery from few labeled examples.
    Yones C, Stegmayer G, Milone DH
    Bioinformatics. 2017 Sep 25;: Pubmed >>
  • Tumor Origin Detection with Tissue-Specific miRNA and DNA methylation Markers.
    Tang W, Wan S, Yang Z, Teschendorff AE, Zou Q
    Bioinformatics. 2017 Sep 28;: Pubmed >>
  • Comparative analysis of miRNA expression during the development of insects of different metamorphosis modes and germ-band types.
    Ylla G, Piulachs MD, Belles X
    BMC Genomics. 2017 Oct 11;18(1):774 Pubmed >>
  • MicroRNA-193a inhibits breast cancer proliferation and metastasis by downregulating WT1.
    Xie F, Hosany S, Zhong S, Jiang Y, Zhang F, Lin L, Wang X, Gao S, Hu X
    PLoS One. 2017;12(10):e0185565 Pubmed >>
  • Making Connections: MAC Function in Splicing and MicroRNA Biogenesis.
    Mach J
    Plant Cell. 2017 Oct 06;: Pubmed >>
  • Identification of common oncogenic and early developmental pathways in the ovarian carcinomas controlling by distinct prognostically significant microRNA subsets.
    Kuznetsov VA, Tang Z, Ivshina AV
    BMC Genomics. 2017 Oct 03;18(Suppl 6):692 Pubmed >>
  • Construction of miRNA-miRNA networks revealing the complexity of miRNA-mediated mechanisms in trastuzumab treated breast cancer cell lines.
    Cilek EE, Ozturk H, Gur Dedeoglu B
    PLoS One. 2017;12(10):e0185558 Pubmed >>
  • Period2 3'-UTR and microRNA-24 regulate circadian rhythms by repressing PERIOD2 protein accumulation.
    Yoo SH, Kojima S, Shimomura K, Koike N, Buhr ED, Furukawa T, Ko CH, Gloston G, Ayoub C, Nohara K, Reyes BA, Tsuchiya Y, Yoo OJ, Yagita K, Lee C, Chen Z, Yamazaki S, Green CB, Takahashi JS
    Proc Natl Acad Sci U S A. 2017 Oct 02;: Pubmed >>
  • MicroRNA-30b controls endothelial cell capillary morphogenesis through regulation of transforming growth factor beta 2.
    Howe GA, Kazda K, Addison CL
    PLoS One. 2017;12(10):e0185619 Pubmed >>
  • Rice stripe virus NS3 protein regulates primary miRNA processing through association with the miRNA biogenesis factor OsDRB1 and facilitates virus infection in rice.
    Zheng L, Zhang C, Shi C, Wang Y, Zhou T, Sun F, Wang H, Zhao S, Qin Q, Qiao R, Ding Z, Wei C, Xie L, Wu J, Li Y
    PLoS Pathog. 2017 Oct 04;13(10):e1006662 Pubmed >>