All the tools you need to analyse your miRNAs

Tools4miRs is a first, manually curated platform gathering at the present over 170 methods for the broadly-defined miRNA analysis. All tools in Tools4miRs are classified in the four general and seven more detailed categories. In each of the aforementioned sections user can additionally filter available methods according to his research needs, capabilities and preferences. Beside basic summary seen at first glance, the user can get detailed information concerning each tool. Tools4miRs is also a web-based target prediction meta-server incorporating user-designated target prediction methods in the analysis of user-provided data. Results generated by described meta-server can be presented in basic and extended form, while user can can additionally filter them using Union, Intersection or Consensus method. Tools4miRs is free, open-access service which will be systematically updated.
miRNA Biogenesis and Function
Concept, Design, Animation: Katharina Petsche
Tools4miRs v.1.1
Number of tools: 201
Last update: Oct. 24, 2018, 12:01 a.m.
Latest Literature
  • The microRNA-29/PGC1α regulatory axis is critical for metabolic control of cardiac function.
    Caravia XM, Fanjul V, Oliver E, Roiz-Valle D, Morán-Álvarez A, Desdín-Micó G, Mittelbrunn M, Cabo R, Vega JA, Rodríguez F, Fueyo A, Gómez M, Lobo-González M, Bueno H, Velasco G, Freije JMP, Andrés V, Ibáñez B, Ugalde AP, López-Otín C
    PLoS Biol. 2018 Oct 22;16(10):e2006247 Pubmed >>
  • Major domestication-related phenotypes in indica rice are due to loss of miRNA-mediated laccase silencing.
    Swetha C, Basu D, Pachamuthu K, Tirumalai V, Nair A, Prasad M, Shivaprasad PV
    Plant Cell. 2018 Oct 19;: Pubmed >>
  • Post-transcriptional control of miRNA biogenesis.
    Michlewski GP, Caceres JF
    RNA. 2018 Oct 17;: Pubmed >>
  • EVmiRNA: a database of miRNA profiling in extracellular vesicles.
    Liu T, Zhang Q, Zhang J, Li C, Miao YR, Lei Q, Li Q, Guo AY
    Nucleic Acids Res. 2018 Oct 18;: Pubmed >>
  • Chromosome 19 miRNA cluster and CEBPB expression specifically mark and potentially drive triple negative breast cancers.
    Jinesh GG, Flores ER, Brohl AS
    PLoS One. 2018;13(10):e0206008 Pubmed >>
  • miRWalk: An online resource for prediction of microRNA binding sites.
    Sticht C, De La Torre C, Parveen A, Gretz N
    PLoS One. 2018;13(10):e0206239 Pubmed >>
  • Discovering the 'Dark matters' in expression data of miRNA based on the miRNA-mRNA and miRNA-lncRNA networks.
    Pian C, Zhang G, Wu S, Li F
    BMC Bioinformatics. 2018 Oct 16;19(1):379 Pubmed >>
  • Blood-based microRNA profiling in patients with cardiac amyloidosis.
    Derda AA, Pfanne A, Bär C, Schimmel K, Kennel PJ, Xiao K, Schulze PC, Bauersachs J, Thum T
    PLoS One. 2018;13(10):e0204235 Pubmed >>
  • Retraction: MicroRNA-143 Targets Syndecan-1 to Repress Cell Growth in Melanoma.
    PLOS ONE Editors
    PLoS One. 2018;13(10):e0205767 Pubmed >>
  • Setbacks shadow microRNA therapies in the clinic.
    Jones D
    Nat Biotechnol. 2018 Oct 11;36(10):909-910 Pubmed >>
  • MicroRNA and mRNA expression associated with ectopic germinal centers in thymus of myasthenia gravis.
    Sengupta M, Wang BD, Lee NH, Marx A, Kusner LL, Kaminski HJ
    PLoS One. 2018;13(10):e0205464 Pubmed >>
  • MicroRNA-146a is induced by inflammatory stimuli in airway epithelial cells and augments the anti-inflammatory effects of glucocorticoids.
    Lambert KA, Roff AN, Panganiban RP, Douglas S, Ishmael FT
    PLoS One. 2018;13(10):e0205434 Pubmed >>
  • Predicting microRNA targeting efficacy in Drosophila.
    Agarwal V, Subtelny AO, Thiru P, Ulitsky I, Bartel DP
    Genome Biol. 2018 Oct 04;19(1):152 Pubmed >>
  • Efficiency and precision of microRNA biogenesis modes in plants.
    Moro B, Chorostecki U, Arikit S, Suarez IP, Höbartner C, Rasia RM, Meyers BC, Palatnik JF
    Nucleic Acids Res. 2018 Oct 05;: Pubmed >>
  • Dual biomarkers long non-coding RNA GAS5 and microRNA-34a co-expression signature in common solid tumors.
    Toraih EA, Alghamdi SA, El-Wazir A, Hosny MM, Hussein MH, Khashana MS, Fawzy MS
    PLoS One. 2018;13(10):e0198231 Pubmed >>
  • A guide to microRNA-mediated gene silencing.
    Quévillon Huberdeau M, Simard MJ
    FEBS J. 2018 Sep 29;: Pubmed >>
  • Genome-scale MicroRNA target prediction through clustering with Dirichlet process mixture model.
    Hakguder Z, Shu J, Liao C, Pan K, Cui J
    BMC Genomics. 2018 Sep 24;19(Suppl 7):658 Pubmed >>
  • Revealing post-transcriptional microRNA-mRNA regulations in Alzheimer's disease through ensemble graphs.
    Armañanzas R
    BMC Genomics. 2018 Sep 24;19(Suppl 7):668 Pubmed >>
  • The sequence features that define efficient and specific hAGO2-dependent miRNA silencing guides.
    Yan Y, Acevedo M, Mignacca L, Desjardins P, Scott N, Imane R, Quenneville J, Robitaille J, Feghaly A, Gagnon E, Ferbeyre G, Major F
    Nucleic Acids Res. 2018 Sep 19;46(16):8181-8196 Pubmed >>
  • Crosstalk between alternative polyadenylation and miRNA in regulation of protein translational efficiency.
    Fu Y, Chen L, Chen C, Ge Y, Kang M, Song Z, Li J, Feng Y, Huo Z, He G, Hou M, Chen S, Xu A
    Genome Res. 2018 Sep 18;: Pubmed >>