All the tools you need to analyse your miRNAs

Overview
Tools4miRs is a first, manually curated platform gathering at the present over 170 methods for the broadly-defined miRNA analysis. All tools in Tools4miRs are classified in the four general and seven more detailed categories. In each of the aforementioned sections user can additionally filter available methods according to his research needs, capabilities and preferences. Beside basic summary seen at first glance, the user can get detailed information concerning each tool. Tools4miRs is also a web-based target prediction meta-server incorporating user-designated target prediction methods in the analysis of user-provided data. Results generated by described meta-server can be presented in basic and extended form, while user can can additionally filter them using Union, Intersection or Consensus method. Tools4miRs is free, open-access service which will be systematically updated.
miRNA Biogenesis and Function
Concept, Design, Animation: Katharina Petsche
Statistics
Tools4miRs v.1.1
Number of tools: 203
Last update: April 26, 2019, 12:01 a.m.
Latest Literature
  • RIP-Chip analysis supports different roles for AGO2 and GW182 proteins in recruiting and processing microRNA targets.
    Perconti G, Rubino P, Contino F, Bivona S, Bertolazzi G, Tumminello M, Feo S, Giallongo A, Coronnello C
    BMC Bioinformatics. 2019 Apr 18;20(Suppl 4):120 Pubmed >>
  • Automatic Curation of Large Comparative Animal MicroRNA Data Sets.
    Yazbeck AM, Stadler PF, Tout K, Fallmann J
    Bioinformatics. 2019 Apr 16;: Pubmed >>
  • Cell-specific CRISPR-Cas9 activation by microRNA-dependent expression of anti-CRISPR proteins.
    Hoffmann MD, Aschenbrenner S, Grosse S, Rapti K, Domenger C, Fakhiri J, Mastel M, Börner K, Eils R, Grimm D, Niopek D
    Nucleic Acids Res. 2019 Apr 15;: Pubmed >>
  • A learning-based framework for miRNA-disease association identification using neural networks.
    Peng J, Hui W, Li Q, Chen B, Hao J, Jiang Q, Shang X, Wei Z
    Bioinformatics. 2019 Apr 12;: Pubmed >>
  • Regenerative therapy based on miRNA-302 mimics for enhancing host recovery from pneumonia caused by Streptococcus pneumoniae.
    Wang Y, Li Y, Zhang P, Baker ST, Wolfson MR, Weiser JN, Tian Y, Shen H
    Proc Natl Acad Sci U S A. 2019 Apr 10;: Pubmed >>
  • Exon level machine learning analyses elucidate novel candidate miRNA targets in an avian model of fetal alcohol spectrum disorder.
    Al-Shaer AE, Flentke GR, Berres ME, Garic A, Smith SM
    PLoS Comput Biol. 2019 Apr 11;15(4):e1006937 Pubmed >>
  • Data analysis algorithm for the development of extracellular miRNA-based diagnostic systems for prostate cancer.
    Bryzgunova OE, Zaporozhchenko IA, Lekchnov EA, Amelina EV, Konoshenko MY, Yarmoschuk SV, Pashkovskaya OA, Zheravin AA, Pak SV, Rykova EY, Laktionov PP
    PLoS One. 2019;14(4):e0215003 Pubmed >>
  • Alteration of microRNA-4474/4717 expression and CREB-binding protein in human colorectal cancer tissues infected with Fusobacterium nucleatum.
    Feng YY, Zeng DZ, Tong YN, Lu XX, Dun GD, Tang B, Zhang ZJ, Ye XL, Li Q, Xie JP, Mao XH
    PLoS One. 2019;14(4):e0215088 Pubmed >>
  • Multilayer network analysis of miRNA and protein expression profiles in breast cancer patients.
    Zhang Y, Chen J, Wang Y, Wang D, Cong W, Lai BS, Zhao Y
    PLoS One. 2019;14(4):e0202311 Pubmed >>
  • MicroRNA-520c-3p Functions as a Novel Tumor Suppressor in Lung Adenocarcinoma.
    Li X, Fu Q, Li H, Zhu L, Chen W, Ruan T, Xu W, Yu X
    FEBS J. 2019 Apr 03;: Pubmed >>
  • FOXP1 circular RNA sustains mesenchymal stem cell identity via microRNA inhibition.
    Cherubini A, Barilani M, Rossi RL, Jalal MMK, Rusconi F, Buono G, Ragni E, Cantarella G, Simpson HARW, Péault B, Lazzari L
    Nucleic Acids Res. 2019 Apr 02;: Pubmed >>
  • MicroRNA 10a induces glioma tumorigenesis by targeting myotubularin-related protein 3 and regulating the Wnt/β-catenin signaling pathway.
    Yan Y, Yan H, Wang Q, Zhang L, Liu Y, Yu H
    FEBS J. 2019 Mar 30;: Pubmed >>
  • LMTRDA: Using logistic model tree to predict MiRNA-disease associations by fusing multi-source information of sequences and similarities.
    Wang L, You ZH, Chen X, Li YM, Dong YN, Li LP, Zheng K
    PLoS Comput Biol. 2019 Mar 27;15(3):e1006865 Pubmed >>
  • maTE: Discovering Expressed MicroRNA - Target Interactions.
    Yousef M, Abddallah L, Allmer J
    Bioinformatics. 2019 Mar 21;: Pubmed >>
  • Correction: Hsa-miRNA-765 as a Key Mediator for Inhibiting Growth, Migration and Invasion in Fulvestrant-Treated Prostate Cancer.
    Leung YK, Chan QK, Ng CF, Ma FM, Tse HM, To KF, Maranchie J, Ho SM, Lau KM
    PLoS One. 2019;14(3):e0214184 Pubmed >>
  • Identifying miRNA-mRNA regulatory relationships in breast cancer with invariant causal prediction.
    Pham VV, Zhang J, Liu L, Truong B, Xu T, Nguyen TT, Li J, Le TD
    BMC Bioinformatics. 2019 Mar 15;20(1):143 Pubmed >>
  • A microRNA switch controls dietary restriction-induced longevity through Wnt signaling.
    Xu Y, He Z, Song M, Zhou Y, Shen Y
    EMBO Rep. 2019 Mar 14;: Pubmed >>
  • Identification of coordinately regulated microRNA-gene networks that differ in baboons discordant for LDL-cholesterol.
    Karere GM, Glenn JP, Birnbaum S, Garcia R, VandeBerg JL, Cox LA
    PLoS One. 2019;14(3):e0213494 Pubmed >>
  • Injured liver-released miRNA-122 elicits acute pulmonary inflammation via activating alveolar macrophage TLR7 signaling pathway.
    Wang Y, Liang H, Jin F, Yan X, Xu G, Hu H, Liang G, Zhan S, Hu X, Zhao Q, Liu Y, Jiang ZY, Zhang CY, Chen X, Zen K
    Proc Natl Acad Sci U S A. 2019 Mar 13;: Pubmed >>
  • MicroRNA-148b regulates tumor growth of non-small cell lung cancer through targeting MAPK/JNK pathway.
    Lu L, Liu Q, Wang P, Wu Y, Liu X, Weng C, Fang X, Li B, Cao X, Mao H, Wang L, Guan M, Wang W, Liu G
    BMC Cancer. 2019 Mar 08;19(1):209 Pubmed >>