All the tools you need to analyse your miRNAs

Overview
Tools4miRs is a first, manually curated platform gathering at the present over 170 methods for the broadly-defined miRNA analysis. All tools in Tools4miRs are classified in the four general and seven more detailed categories. In each of the aforementioned sections user can additionally filter available methods according to his research needs, capabilities and preferences. Beside basic summary seen at first glance, the user can get detailed information concerning each tool. Tools4miRs is also a web-based target prediction meta-server incorporating user-designated target prediction methods in the analysis of user-provided data. Results generated by described meta-server can be presented in basic and extended form, while user can can additionally filter them using Union, Intersection or Consensus method. Tools4miRs is free, open-access service which will be systematically updated.
miRNA Biogenesis and Function
Concept, Design, Animation: Katharina Petsche
Statistics
Tools4miRs v.1.1
Number of tools: 200
Last update: June 20, 2018, 12:02 a.m.
Latest Literature
  • Microprocessor-dependent processing of Splice site Overlapping microRNA exons does not result in changes in alternative splicing.
    Pianigiani G, Licastro D, Fortugno P, Castiglia D, Petrovic I, Pagani F
    RNA. 2018 Jun 12;: Pubmed >>
  • miRNACancerMAP: an integrative web server inferring miRNA regulation network for cancer.
    Tong Y, Ru B, Zhang J
    Bioinformatics. 2018 Apr 20;: Pubmed >>
  • An interplay of miRNA abundance and target site architecture determines miRNA activity and specificity.
    Brancati G, Großhans H
    Nucleic Acids Res. 2018 Apr 20;46(7):3259-3269 Pubmed >>
  • The microRNA expression signature of CD4+ T cells in the transition of brucellosis into chronicity.
    Budak F, Bal SH, Tezcan G, Akalın EH, Yılmaz A, Hız P, Oral HB
    PLoS One. 2018;13(6):e0198659 Pubmed >>
  • TAM 2.0: tool for MicroRNA set analysis.
    Li J, Han X, Wan Y, Zhang S, Zhao Y, Fan R, Cui Q, Zhou Y
    Nucleic Acids Res. 2018 Jun 06;: Pubmed >>
  • Optimizing miRNA-module diagnostic biomarkers of gastric carcinoma via integrated network analysis.
    Zhang F, Xu W, Liu J, Liu X, Huo B, Li B, Wang Z
    PLoS One. 2018;13(6):e0198445 Pubmed >>
  • Expanding the horizons of microRNA bioinformatics.
    Huntley RP, Kramarz B, Sawford T, Umrao Z, Kalea AZ, Acquaah V, Martin MJ, Mayr M, Lovering RC
    RNA. 2018 Jun 05;: Pubmed >>
  • DeepMirTar: a deep-learning approach for predicting human miRNA targets.
    Wen M, Cong P, Zhang Z, Lu H, Li T
    Bioinformatics. 2018 Jun 01;: Pubmed >>
  • MicroRNA and cellular targets profiling reveal miR-217 and miR-576-3p as proviral factors during Oropouche infection.
    Geddes VEV, de Oliveira AS, Tanuri A, Arruda E, Ribeiro-Alves M, Aguiar RS
    PLoS Negl Trop Dis. 2018 May 29;12(5):e0006508 Pubmed >>
  • Characterization of microRNA and mRNA expression profiles in skin tissue between early-feathering and late-feathering chickens.
    Fang G, Jia X, Li H, Tan S, Nie Q, Yu H, Yang Y
    BMC Genomics. 2018 May 25;19(1):399 Pubmed >>
  • Increased circulating microRNA-122 is a biomarker for discrimination and risk stratification in patients defined by sepsis-3 criteria.
    Rahmel T, Schäfer ST, Frey UH, Adamzik M, Peters J
    PLoS One. 2018;13(5):e0197637 Pubmed >>
  • SWI2/SNF2 ATPase CHR2 remodels pri-miRNAs via Serrate to impede miRNA production.
    Wang Z, Ma Z, Castillo-González C, Sun D, Li Y, Yu B, Zhao B, Li P, Zhang X
    Nature. 2018 May 16;: Pubmed >>
  • Integrated miRNA-mRNA analysis reveals regulatory pathways underlying the curly fleece trait in Chinese tan sheep.
    Liu Y, Zhang J, Xu Q, Kang X, Wang K, Wu K, Fang M
    BMC Genomics. 2018 May 11;19(1):360 Pubmed >>
  • Microprocessor depends on hemin to recognize the apical loop of primary microRNA.
    Nguyen TA, Park J, Dang TL, Choi YG, Kim VN
    Nucleic Acids Res. 2018 May 10;: Pubmed >>
  • Hierarchical structural component modeling of microRNA-mRNA integration analysis.
    Kim Y, Lee S, Choi S, Jang JY, Park T
    BMC Bioinformatics. 2018 May 08;19(Suppl 4):75 Pubmed >>
  • Specific serum and CSF microRNA profiles distinguish sporadic behavioural variant of frontotemporal dementia compared with Alzheimer patients and cognitively healthy controls.
    Denk J, Oberhauser F, Kornhuber J, Wiltfang J, Fassbender K, Schroeter ML, Volk AE, Diehl-Schmid J, Prudlo J, Danek A, Landwehrmeyer B, Lauer M, Otto M, Jahn H, FTLDc study group
    PLoS One. 2018;13(5):e0197329 Pubmed >>
  • Dicer cleaves 5'-extended microRNA precursors originating from RNA polymerase II transcription start sites.
    Sheng P, Fields C, Aadland K, Wei T, Kolaczkowski O, Gu T, Kolaczkowski B, Xie M
    Nucleic Acids Res. 2018 May 09;: Pubmed >>
  • Defensive effect of microRNA-200b/c against amyloid-beta peptide-induced toxicity in Alzheimer's disease models.
    Higaki S, Muramatsu M, Matsuda A, Matsumoto K, Satoh JI, Michikawa M, Niida S
    PLoS One. 2018;13(5):e0196929 Pubmed >>
  • microRNA-451a regulates colorectal cancer proliferation in response to radiation.
    Ruhl R, Rana S, Kelley K, Espinosa-Diez C, Hudson C, Lanciault C, Thomas CR, Liana Tsikitis V, Anand S
    BMC Cancer. 2018 May 03;18(1):517 Pubmed >>
  • MicroRNA-focused CRISPR-Cas9 Library Screen Reveals Fitness-Associated miRNAs.
    Kurata JS, Lin RJ
    RNA. 2018 May 02;: Pubmed >>