All the tools you need to analyse your miRNAs

Tools4miRs is a first, manually curated platform gathering at the present over 170 methods for the broadly-defined miRNA analysis. All tools in Tools4miRs are classified in the four general and seven more detailed categories. In each of the aforementioned sections user can additionally filter available methods according to his research needs, capabilities and preferences. Beside basic summary seen at first glance, the user can get detailed information concerning each tool. Tools4miRs is also a web-based target prediction meta-server incorporating user-designated target prediction methods in the analysis of user-provided data. Results generated by described meta-server can be presented in basic and extended form, while user can can additionally filter them using Union, Intersection or Consensus method. Tools4miRs is free, open-access service which will be systematically updated.
miRNA Biogenesis and Function
Concept, Design, Animation: Katharina Petsche
Tools4miRs v.1.1
Number of tools: 200
Last update: July 14, 2018, 12:01 a.m.
Latest Literature
  • miRAW: A deep learning-based approach to predict microRNA targets by analyzing whole microRNA transcripts.
    Pla A, Zhong X, Rayner S
    PLoS Comput Biol. 2018 Jul 13;14(7):e1006185 Pubmed >>
  • Identification of novel diabetes impaired miRNA-transcription factor co-regulatory networks in bone marrow-derived Lin-/VEGF-R2+ endothelial progenitor cells.
    Irhimeh MR, Hamed M, Barthelmes D, Gladbach Y, Helms V, Shen W, Gillies MC
    PLoS One. 2018;13(7):e0200194 Pubmed >>
  • SMA1, a homolog of the splicing factor Prp28, has a multifaceted role in miRNA biogenesis in Arabidopsis.
    Li S, Xu R, Li A, Liu K, Gu L, Li M, Zhang H, Zhang Y, Zhuang S, Wang Q, Gao G, Li N, Zhang C, Li Y, Yu B
    Nucleic Acids Res. 2018 Jun 30;: Pubmed >>
  • LncmiRSRN: identification and analysis of long non-coding RNA related miRNA sponge regulatory network in human cancer.
    Zhang J, Liu L, Li J, Le TD
    Bioinformatics. 2018 Jun 28;: Pubmed >>
  • Induction of innate immune memory via microRNA targeting of chromatin remodelling factors.
    Seeley JJ, Baker RG, Mohamed G, Bruns T, Hayden MS, Deshmukh SD, Freedberg DE, Ghosh S
    Nature. 2018 Jun 27;: Pubmed >>
  • MicroRNA-29b-2-5p inhibits cell proliferation by directly targeting Cbl-b in pancreatic ductal adenocarcinoma.
    Li C, Dong Q, Che X, Xu L, Li Z, Fan Y, Hou K, Wang S, Qu J, Xu L, Wen T, Yang X, Qu X, Liu Y
    BMC Cancer. 2018 Jun 25;18(1):681 Pubmed >>
  • Degradation of unmethylated miRNA/miRNA*s by a DEDDy-type 3' to 5' exoribonuclease Atrimmer 2 in Arabidopsis.
    Wang X, Wang Y, Dou Y, Chen L, Wang J, Jiang N, Guo C, Yao Q, Wang C, Liu L, Yu B, Zheng B, Chekanova JA, Ma J, Ren G
    Proc Natl Acad Sci U S A. 2018 Jun 25;: Pubmed >>
  • Predicting miRNA-disease association based on inductive matrix completion.
    Chen X, Wang L, Qu J, Guan NN, Li JQ
    Bioinformatics. 2018 Jun 22;: Pubmed >>
  • Droplet digital PCR-based circulating microRNA detection serve as a promising diagnostic method for gastric cancer.
    Zhao G, Jiang T, Liu Y, Huai G, Lan C, Li G, Jia G, Wang K, Yang M
    BMC Cancer. 2018 Jun 22;18(1):676 Pubmed >>
  • Opposing roles of microRNA Argonautes during Caenorhabditis elegans aging.
    Aalto AP, Nicastro IA, Broughton JP, Chipman LB, Schreiner WP, Chen JS, Pasquinelli AE
    PLoS Genet. 2018 06;14(6):e1007379 Pubmed >>
  • Microprocessor-dependent processing of Splice site Overlapping microRNA exons does not result in changes in alternative splicing.
    Pianigiani G, Licastro D, Fortugno P, Castiglia D, Petrovic I, Pagani F
    RNA. 2018 Jun 12;: Pubmed >>
  • miRNACancerMAP: an integrative web server inferring miRNA regulation network for cancer.
    Tong Y, Ru B, Zhang J
    Bioinformatics. 2018 Apr 20;: Pubmed >>
  • An interplay of miRNA abundance and target site architecture determines miRNA activity and specificity.
    Brancati G, Großhans H
    Nucleic Acids Res. 2018 Apr 20;46(7):3259-3269 Pubmed >>
  • The microRNA expression signature of CD4+ T cells in the transition of brucellosis into chronicity.
    Budak F, Bal SH, Tezcan G, Akalın EH, Yılmaz A, Hız P, Oral HB
    PLoS One. 2018;13(6):e0198659 Pubmed >>
  • TAM 2.0: tool for MicroRNA set analysis.
    Li J, Han X, Wan Y, Zhang S, Zhao Y, Fan R, Cui Q, Zhou Y
    Nucleic Acids Res. 2018 Jun 06;: Pubmed >>
  • Optimizing miRNA-module diagnostic biomarkers of gastric carcinoma via integrated network analysis.
    Zhang F, Xu W, Liu J, Liu X, Huo B, Li B, Wang Z
    PLoS One. 2018;13(6):e0198445 Pubmed >>
  • Expanding the horizons of microRNA bioinformatics.
    Huntley RP, Kramarz B, Sawford T, Umrao Z, Kalea AZ, Acquaah V, Martin MJ, Mayr M, Lovering RC
    RNA. 2018 Jun 05;: Pubmed >>
  • DeepMirTar: a deep-learning approach for predicting human miRNA targets.
    Wen M, Cong P, Zhang Z, Lu H, Li T
    Bioinformatics. 2018 Jun 01;: Pubmed >>
  • MicroRNA and cellular targets profiling reveal miR-217 and miR-576-3p as proviral factors during Oropouche infection.
    Geddes VEV, de Oliveira AS, Tanuri A, Arruda E, Ribeiro-Alves M, Aguiar RS
    PLoS Negl Trop Dis. 2018 May 29;12(5):e0006508 Pubmed >>
  • Characterization of microRNA and mRNA expression profiles in skin tissue between early-feathering and late-feathering chickens.
    Fang G, Jia X, Li H, Tan S, Nie Q, Yu H, Yang Y
    BMC Genomics. 2018 May 25;19(1):399 Pubmed >>