All the tools you need to analyse your miRNAs

Tools4miRs is a first, manually curated platform gathering at the present over 170 methods for the broadly-defined miRNA analysis. All tools in Tools4miRs are classified in the four general and seven more detailed categories. In each of the aforementioned sections user can additionally filter available methods according to his research needs, capabilities and preferences. Beside basic summary seen at first glance, the user can get detailed information concerning each tool. Tools4miRs is also a web-based target prediction meta-server incorporating user-designated target prediction methods in the analysis of user-provided data. Results generated by described meta-server can be presented in basic and extended form, while user can can additionally filter them using Union, Intersection or Consensus method. Tools4miRs is free, open-access service which will be systematically updated.
miRNA Biogenesis and Function
Concept, Design, Animation: Katharina Petsche
Tools4miRs v.1.1
Number of tools: 200
Last update: March 22, 2018, 12:01 a.m.
Latest Literature
  • Correction for Place et al., MicroRNA-373 induces expression of genes with complementary promoter sequences.

    Proc Natl Acad Sci U S A. 2018 Mar 19;: Pubmed >>
  • Down-regulation of microRNA-203-3p initiates type 2 pathology during schistosome infection via elevation of interleukin-33.
    He X, Xie J, Wang Y, Fan X, Su Q, Sun Y, Lei N, Zhang D, Gao G, Pan W
    PLoS Pathog. 2018 Mar 19;14(3):e1006957 Pubmed >>
  • Tumor characterization by ultrasound-release of multiple protein and microRNA biomarkers, preclinical and clinical evidence.
    D'Souza AL, Chevillet JR, Ghanouni P, Yan X, Tewari M, Gambhir SS
    PLoS One. 2018;13(3):e0194268 Pubmed >>
  • Silencing of HaAce1 gene by host-delivered artificial microRNA disrupts growth and development of Helicoverpa armigera.
    Saini RP, Raman V, Dhandapani G, Malhotra EV, Sreevathsa R, Kumar PA, Sharma TR, Pattanayak D
    PLoS One. 2018;13(3):e0194150 Pubmed >>
  • Systematic Discovery of RNA Binding Proteins that Regulate MicroRNA Levels.
    Nussbacher JK, Yeo GW
    Mol Cell. 2018 Mar 15;69(6):1005-1016.e7 Pubmed >>
  • Transmission of microRNA antimiRs to mouse offspring via the maternal-placental-fetal unit.
    Hönig J, Mižíková I, Nardiello C, Surate Solaligue DE, Daume MJ, Vadász I, Mayer K, Herold S, Günther S, Seeger W, Morty RE
    RNA. 2018 Mar 14;: Pubmed >>
  • Identifying optimal reference genes for the normalization of microRNA expression in cucumber under viral stress.
    Liang C, Hao J, Meng Y, Luo L, Li J
    PLoS One. 2018;13(3):e0194436 Pubmed >>
  • MicroRNA Signatures for circulating CD133-positive cells in hepatocellular carcinoma with HCV infection.
    Zekri AN, El-Sisi ER, Youssef ASE, Kamel MM, Nassar A, Ahmed OS, El Kassas M, Barakat AB, Abd El-Motaleb AI, Bahnassy AA
    PLoS One. 2018;13(3):e0193709 Pubmed >>
  • Validation of a microRNA target site polymorphism in H3F3B that is potentially associated with a broad schizophrenia phenotype.
    Manley W, Moreau MP, Azaro M, Siecinski SK, Davis G, Buyske S, Vieland V, Bassett AS, Brzustowicz L
    PLoS One. 2018;13(3):e0194233 Pubmed >>
  • A circulating microRNA signature as noninvasive diagnostic and prognostic biomarkers for nonalcoholic steatohepatitis.
    Liu J, Xiao Y, Wu X, Jiang L, Yang S, Ding Z, Fang Z, Hua H, Kirby MS, Shou J
    BMC Genomics. 2018 Mar 09;19(1):188 Pubmed >>
  • Coordinated regulation of Arabidopsis microRNA biogenesis and red light signaling through Dicer-like 1 and phytochrome-interacting factor 4.
    Sun Z, Li M, Zhou Y, Guo T, Liu Y, Zhang H, Fang Y
    PLoS Genet. 2018 Mar 09;14(3):e1007247 Pubmed >>
  • A high-throughput 3' UTR reporter screening identifies microRNA interactomes of cancer genes.
    Van Peer G, Mets E, Claeys S, De Punt I, Lefever S, Ongenaert M, Rondou P, Speleman F, Mestdagh P, Vandesompele J
    PLoS One. 2018;13(3):e0194017 Pubmed >>
  • Secretory microRNA-29 expression in gingival crevicular fluid during orthodontic tooth movement.
    Atsawasuwan P, Lazari P, Chen Y, Zhou X, Viana G, Evans CA
    PLoS One. 2018;13(3):e0194238 Pubmed >>
  • Summarizing performance for genome scale measurement of miRNA: reference samples and metrics.
    Pine PS, Lund SP, Parsons JR, Vang LK, Mahabal AA, Cinquini L, Kelly SC, Kincaid H, Crichton DJ, Spira A, Liu G, Gower AC, Pass HI, Goparaju C, Dubinett SM, Krysan K, Stass SA, Kukuruga D, Van Keuren-Jensen K, Courtright-Lim A, Thompson KL, Rosenzweig BA, Sorbara L, Srivastava S, Salit ML
    BMC Genomics. 2018 Mar 06;19(1):180 Pubmed >>
  • MicroRNA duplication accelerates the recruitment of new targets during vertebrate evolution.
    Luo J, Wang Y, Yuan J, Zhao Z, Lu J
    RNA. 2018 Mar 06;: Pubmed >>
  • Identification of a microRNA signature associated with survivability in cervical squamous cell carcinoma.
    Ma C, Zhang W, Wu Q, Liu Y, Wang C, Lao G, Yang L, Liu P
    PLoS One. 2018;13(3):e0193625 Pubmed >>
  • GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, miRNA, and mRNA data in GDC.
    Li R, Qu H, Wang S, Wei J, Zhang L, Ma R, Lu J, Zhu J, Zhong WD, Jia Z
    Bioinformatics. 2018 Mar 02;: Pubmed >>
  • Comparing miRNA structure of mirtrons and non-mirtrons.
    Titov II, Vorozheykin PS
    BMC Genomics. 2018 Feb 09;19(Suppl 3):114 Pubmed >>
  • FUS Regulates Activity of MicroRNA-Mediated Gene Silencing.
    Zhang T, Wu YC, Mullane P, Ji YJ, Liu H, He L, Arora A, Hwang HY, Alessi AF, Niaki AG, Periz G, Guo L, Wang H, Elkayam E, Joshua-Tor L, Myong S, Kim JK, Shorter J, Ong SE, Leung AKL, Wang J
    Mol Cell. 2018 Mar 01;69(5):787-801.e8 Pubmed >>
  • MicroRNA-124-loaded nanoparticles increase survival and neuronal differentiation of neural stem cells in vitro but do not contribute to stroke outcome in vivo.
    Saraiva C, Talhada D, Rai A, Ferreira R, Ferreira L, Bernardino L, Ruscher K
    PLoS One. 2018;13(3):e0193609 Pubmed >>