All the tools you need to analyse your miRNAs

Tools4miRs is a first, manually curated platform gathering at the present over 170 methods for the broadly-defined miRNA analysis. All tools in Tools4miRs are classified in the four general and seven more detailed categories. In each of the aforementioned sections user can additionally filter available methods according to his research needs, capabilities and preferences. Beside basic summary seen at first glance, the user can get detailed information concerning each tool. Tools4miRs is also a web-based target prediction meta-server incorporating user-designated target prediction methods in the analysis of user-provided data. Results generated by described meta-server can be presented in basic and extended form, while user can can additionally filter them using Union, Intersection or Consensus method. Tools4miRs is free, open-access service which will be systematically updated.
miRNA Biogenesis and Function
Concept, Design, Animation: Katharina Petsche
Tools4miRs v.1.1
Number of tools: 203
Last update: March 26, 2019, 12:02 a.m.
Latest Literature
  • maTE: Discovering Expressed MicroRNA - Target Interactions.
    Yousef M, Abddallah L, Allmer J
    Bioinformatics. 2019 Mar 21;: Pubmed >>
  • Correction: Hsa-miRNA-765 as a Key Mediator for Inhibiting Growth, Migration and Invasion in Fulvestrant-Treated Prostate Cancer.
    Leung YK, Chan QK, Ng CF, Ma FM, Tse HM, To KF, Maranchie J, Ho SM, Lau KM
    PLoS One. 2019;14(3):e0214184 Pubmed >>
  • Identifying miRNA-mRNA regulatory relationships in breast cancer with invariant causal prediction.
    Pham VV, Zhang J, Liu L, Truong B, Xu T, Nguyen TT, Li J, Le TD
    BMC Bioinformatics. 2019 Mar 15;20(1):143 Pubmed >>
  • A microRNA switch controls dietary restriction-induced longevity through Wnt signaling.
    Xu Y, He Z, Song M, Zhou Y, Shen Y
    EMBO Rep. 2019 Mar 14;: Pubmed >>
  • Identification of coordinately regulated microRNA-gene networks that differ in baboons discordant for LDL-cholesterol.
    Karere GM, Glenn JP, Birnbaum S, Garcia R, VandeBerg JL, Cox LA
    PLoS One. 2019;14(3):e0213494 Pubmed >>
  • Injured liver-released miRNA-122 elicits acute pulmonary inflammation via activating alveolar macrophage TLR7 signaling pathway.
    Wang Y, Liang H, Jin F, Yan X, Xu G, Hu H, Liang G, Zhan S, Hu X, Zhao Q, Liu Y, Jiang ZY, Zhang CY, Chen X, Zen K
    Proc Natl Acad Sci U S A. 2019 Mar 13;: Pubmed >>
  • MicroRNA-148b regulates tumor growth of non-small cell lung cancer through targeting MAPK/JNK pathway.
    Lu L, Liu Q, Wang P, Wu Y, Liu X, Weng C, Fang X, Li B, Cao X, Mao H, Wang L, Guan M, Wang W, Liu G
    BMC Cancer. 2019 Mar 08;19(1):209 Pubmed >>
  • MDA-7/IL-24 regulates the miRNA processing enzyme DICER through downregulation of MITF.
    Pradhan AK, Bhoopathi P, Talukdar S, Scheunemann D, Sarkar D, Cavenee WK, Das SK, Emdad L, Fisher PB
    Proc Natl Acad Sci U S A. 2019 Mar 06;: Pubmed >>
  • OPTIMIR, a novel algorithm for integrating available genome-wide genotype data into miRNA sequence alignment analysis.
    Thibord F, Perret C, Roux M, Suchon P, Germain M, Deleuze JF, Morange PE, Tregouet DA
    RNA. 2019 Feb 28;: Pubmed >>
  • Biclustering analysis of transcriptome big data identifies condition-specific microRNA targets.
    Yoon S, Nguyen HCT, Jo W, Kim J, Chi SM, Park J, Kim SY, Nam D
    Nucleic Acids Res. 2019 Mar 01;: Pubmed >>
  • Significant improvement of miRNA target prediction accuracy in large datasets using meta-strategy based on comprehensive voting and artificial neural networks.
    Zhao B, Xue B
    BMC Genomics. 2019 Feb 27;20(1):158 Pubmed >>
  • Quantitative zeptomolar imaging of miRNA cancer markers with nanoparticle assemblies.
    Qu A, Sun M, Xu L, Hao C, Wu X, Xu C, Kotov NA, Kuang H
    Proc Natl Acad Sci U S A. 2019 Feb 26;116(9):3391-3400 Pubmed >>
  • MicroRNA-186-5p controls GluA2 surface expression and synaptic scaling in hippocampal neurons.
    Silva MM, Rodrigues B, Fernandes J, Santos SD, Carreto L, Santos MAS, Pinheiro P, Carvalho AL
    Proc Natl Acad Sci U S A. 2019 Feb 26;: Pubmed >>
  • Development of novel predictive miRNA/target gene pathways for colorectal cancer distance metastasis to the liver using a bioinformatic approach.
    Makondi PT, Wei PL, Huang CY, Chang YJ
    PLoS One. 2019;14(2):e0211968 Pubmed >>
  • Regulation of MicroRNA Machinery and Development by Interspecies S-Nitrosylation.
    Seth P, Hsieh PN, Jamal S, Wang L, Gygi SP, Jain MK, Coller J, Stamler JS
    Cell. 2019 Feb 21;176(5):1014-1025.e12 Pubmed >>
  • A unique insight into the MiRNA profile during genital chlamydial infection.
    Benyeogor I, Simoneaux T, Wu Y, Lundy S, George Z, Ryans K, McKeithen D, Pais R, Ellerson D, Lorenz WW, Omosun T, Thompson W, Eko FO, Black CM, Blas-Machado U, Igietseme JU, He Q, Omosun Y
    BMC Genomics. 2019 Feb 18;20(1):143 Pubmed >>
  • Inferring the regulatory network of the miRNA-mediated response to biotic and abiotic stress in melon.
    Sanz-Carbonell A, Marques MC, Bustamante A, Fares MA, Rodrigo G, Gomez G
    BMC Plant Biol. 2019 Feb 18;19(1):78 Pubmed >>
  • Identification of whole blood mRNA and microRNA biomarkers of tissue damage and immune function resulting from amphetamine exposure or heat stroke in adult male rats.
    Camacho L, Silva CS, Hanig JP, Schleimer RP, George NI, Bowyer JF
    PLoS One. 2019;14(2):e0210273 Pubmed >>
  • Alterations in tissue microRNA after heat stress in the conscious rat: potential biomarkers of organ-specific injury.
    Permenter MG, McDyre BC, Ippolito DL, Stallings JD
    BMC Genomics. 2019 Feb 15;20(1):141 Pubmed >>
  • Anti-inflammatory microRNA-146a protects mice from diet-induced metabolic disease.
    Runtsch MC, Nelson MC, Lee SH, Voth W, Alexander M, Hu R, Wallace J, Petersen C, Panic V, Villanueva CJ, Evason KJ, Bauer KM, Mosbruger T, Boudina S, Bronner M, Round JL, Drummond MJ, O'Connell RM
    PLoS Genet. 2019 Feb 15;15(2):e1007970 Pubmed >>