All the tools you need to analyse your miRNAs

TarPmiR


Target Prediction


Analysis Scheme:
Approach for miRNA target site prediction which includes 13 different features.

Homepage: Link

Last Software Update: March 19, 2016
Publication Date: May 20, 2016
Citations: 9 [via Pubmed]

Organism Specific:
  • human

  • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: easy
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    Performance : Correct predictions: 74,2%
    License: Free for academic use
    Input Data Required:
  • miRNA sequence (FASTA)
  • mRNA sequence (FASTA)

  • Target Prediction
    Algorithm Features:
  • seed match
  • conservation
  • free energy
  • site accessibility
  • machine learning
  • 3' compensatory pairing
  • local AU content
  • m/e motif
  • the total number of paired positions
  • the length of the target mRNA region
  • the lenght of the largest consecutive pairings
  • and two others

  • Target Region: any
    Target Annotation:
    Algorithm: Random Forest-based
    NGS Data Needed:
    Metaserver:





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