All the tools you need to analyse your miRNAs

TargetRNA2


Target Prediction


TargetRNA2 is a web server that identifies mRNA targets of sRNA regulatory action in bacteria. As input, TargetRNA2 takes the sequence of an sRNA and the name of a sequenced bacterial replicon. When searching for targets of RNA regulation, TargetRNA2 uses a variety of features, including conservation of the sRNA in other bacteria, the secondary structure of the sRNA, the secondary structure of each candidate mRNA target and the hybridization energy between the sRNA and each candidate mRNA target.

Homepage: Link

Last Software Update: July 1, 2014
Publication Date: April 21, 2014
Citations: 47 [via Pubmed]

Organism Specific:
  • bacteria

  • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: easy
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    Performance : Sensitivity: 48%, FPR: 0.37%
    Cross-Refferences:
  • NCBI

  • Target Prediction
    Algorithm Features:
  • seed match
  • conservation
  • free energy
  • site accessibility
  • 3' compensatory pairing
  • G:U pairs allowed in the seed

  • Target Region: any
    Target Annotation:
    NGS Data Needed:
    Metaserver:





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