All the tools you need to analyse your miRNAs

TargetMiner


Target Prediction


Analysis Scheme:
A robust tool for microRNA target prediction with systematic identification of negative examples. TargetMiner is a support vector machine (SVM)-based classifier.

Homepage: Link

Last Software Update: March 9, 2013
Publication Date: Aug. 19, 2009
Citations: 65 [via Pubmed]

Organism Specific:
  • human

  • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: intermediate
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    Performance : Sensitivity: 69%, specificity: 67.8%
    License: free for academic use olny
    Target Prediction
    Algorithm Features:
  • seed match
  • conservation
  • free energy
  • site accessibility
  • target-site abundance
  • machine learning
  • 3' compensatory pairing
  • G:U pairs allowed in the seed
  • local AU content

  • Target Region: 3'UTR
    Target Annotation:
    NGS Data Needed:
    Metaserver:





    Comments & Ratings