All the tools you need to analyse your miRNAs

TAPIR


Target Prediction


TAPIR is designed for the prediction of plant microRNA targets. This web server offers the possibility to search for plant miRNA targets using a fast and a precise algorithm. The precise option is much slower but guarantees to find less perfectly paired miRNA-target duplexes. Furthermore, the precise option allows the prediction of target mimics, which are characterized by a miRNA-target duplex having a large loop, making them undetectable by traditional tools.

Homepage: Link

Last Software Update: March 28, 2014
Publication Date: April 28, 2010
Citations: 70 [via Pubmed]

Organism Specific:
  • plants

  • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: easy (online), advanced (local)
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    Performance : Sensitivity: 98%, Specificity: 99.3%
    License: GPLv2
    Cross-Refferences:
  • TAIR

  • Target Prediction
    Algorithm Features:
  • seed match
  • free energy
  • 3' compensatory pairing
  • G:U pairs allowed in the seed

  • Target Region: any
    Target Annotation:
    NGS Data Needed:
    Metaserver:





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