All the tools you need to analyse your miRNAs

TaLasso


Target Prediction Target Functional Analysis


TaLasso algorithm combines the information of sequence databases with mRNA and miRNA expression to quantify the down-regulation between miRNAs and their putative targets.

Homepage: Link Offline

Last Software Update: March 21, 2011
Publication Date: Feb. 14, 2012
Citations: 22 [via Pubmed]

Organism Specific:
  • human

  • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: easy
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    Target Prediction
    Algorithm Features:
  • seed match
  • conservation
  • free energy
  • site accessibility
  • target-site abundance
  • 3' compensatory pairing
  • G:U pairs allowed in the seed
  • local AU content
  • miRNA & mRNA expression (needed)
  • HMM

  • Target Region: 3' UTR, CDS
    Target Annotation:
    Target Enrichment Analysis:
    NGS Data Needed:
    Metaserver:
    Target Prediction Methods Used For Metaserver:
  • PicTar
  • TargetScan
  • DIANA-microT
  • mirWalk
  • miRanda
  • TarBase

  • Target Functional Analysis
    Algorithm: Pearson's correlation
    Analysis Features:
  • miRNA/mRNA Correlation
  • NGS Data Needed:
    Target Prediction Data Needed:





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