All the tools you need to analyse your miRNAs

SVMicrO


Target Prediction


Analysis Scheme:
SVMicrO is mammalian miRNA target prediction algorithm, which assumes a 2-stage structure including a site support vector machine (SVM) followed by a UTR-SVM. SMVicrO makes prediction based on 21 optimal site features and 18 optimal UTR features, selected by training from a comprehensive collection of 113 site and 30 UTR features. Comprehensive evaluation of SVMicrO performance has been carried out on the training data, proteomics data, and immunoprecipitation (IP) pull-down data.

Homepage: Link

Last Software Update: Sept. 22, 2010
Publication Date: Sept. 22, 2010
Citations: 25 [via Pubmed]

Organism Specific:
  • mammals

  • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: advanced
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download: (human)
    Performance : Sensitivity: 96%
    Target Prediction
    Algorithm Features:
  • seed match
  • conservation
  • free energy
  • site accessibility
  • target-site abundance
  • machine learning
  • 3' compensatory pairing
  • G:U pairs allowed in the seed
  • local AU content

  • Target Region: 3' UTR
    Target Annotation:
    NGS Data Needed:
    Metaserver:





    Comments & Ratings