All the tools you need to analyse your miRNAs

submiRine


Target Prediction miRNA-SNP Analysis


Analysis Scheme:
An open-source software package for predicting microRNA target site variants (miR-TSVs) from clinical genomic data sets that measure miRNA expression, gene expression, and genotype. The main benefits of SubmiRine are that it allows for de novo prediction of miR-TSVs from custom data sets - such as those that can be generated from large-scale clinical genomics projects - and provides a methodology to prioritize predicted miR-TSVs by their relative probability of being functional.

Homepage: Link

Last Software Update: March 27, 2015
Publication Date: March 26, 2015
Citations: 4 [via Pubmed]

Organism Specific:
  • human

  • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: intermediate
    User Adjustability: (very small)
    User support:
    Precomputed Target Results Available For Download:
    Algorithm: TargetScan6
    License: free
    Input Data Required:
  • miRNA & mRNA expression info

  • Target Prediction
    Algorithm Features:
  • seed match
  • conservation
  • site accessibility
  • target-site abundance
  • 3' compensatory pairing
  • local AU content

  • Target Region: 3' UTR
    Target Annotation:
    Target Enrichment Analysis:
    NGS Data Needed:
    Metaserver:
    miRNA-SNP Analysis
    Target Prediction Data Needed:
    NGS Data Needed:





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