All the tools you need to analyse your miRNAs

STarMir


Target Prediction


Analysis Scheme:
STarMir is a tool for predicting potential binding sites for one or multiple microRNAs (miRNA) in a target RNA sequence (typically mRNA). It is based on the logistic prediction models developed with miRNA binding data from crosslinking immunoprecipitation (CLIP) studies. Each of the candidate sites is assigned a logistic probability as a measure of confidence in the predicted site.

Homepage: Link

Last Software Update: July 1, 2014
Publication Date: May 6, 2014
Citations: 20 [via Pubmed]

Organism Specific:
  • any

  • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: easy
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    Performance : AUC: 0.49
    License: http://sfold.wadsworth.org/License_info.html
    Target Prediction
    Algorithm Features:
  • seed match
  • free energy
  • site accessibility
  • 3' compensatory pairing
  • G:U pairs allowed in the seed
  • local AU content
  • CLIP-based

  • Target Region: any
    Target Annotation:
    NGS Data Needed:
    Metaserver:





    Comments & Ratings