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RNAhybrid


Target Prediction


RNAhybrid is a tool for finding the minimum free energy hybridization of a long and a short RNA. The hybridization is performed in a kind of domain mode, ie. the short sequence is hybridized to the best fitting part of the long one. The tool is primarily meant as a means for microRNA target prediction.

Homepage: Link

Last Software Update: Aug. 25, 2013
Publication Date: July 1, 2006
Reference: [Journal] [Pubmed] [CrossRef]
Citations: 900 [via Pubmed]

Organism Specific:
  • any

    • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: easy
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    Performance : Sensitivity: 58%
    License: GPLv2
    Target Prediction
    Algorithm Features:
  • seed match
  • free energy
  • target-site abundance
  • 3' compensatory pairing
  • G:U pairs allowed in the seed

    • Target Region: 3' UTR
    Target Annotation:
    NGS Data Needed:
    Metaserver:





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