All the tools you need to analyse your miRNAs

psRNATarget


Target Prediction


psRNATarget, a plant small RNA target analysis server, which features two important analysis functions: 1) reverse complementary matching between miRNA and target transcript using a proven scoring schema, and 2) target site accessibility evaluation by calculating unpaired energy (UPE) required to “open” secondary structure around miRNA’s target site on mRNA. PsRNATarget incorporates recent discoveries in plant miRNA target recognition, e.g. it distinguishes translational and post-transcriptional inhibition, and it reports the number of miRNA/target site pairs that may affect miRNA binding activity to target transcript.

Homepage: Link

Last Software Update: May 27, 2011
Publication Date: May 27, 2011
Citations: 480 [via Pubmed]

Organism Specific:
  • plants

  • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: easy
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    Performance : FPR: 26.9%
    Target Prediction
    Algorithm Features:
  • seed match
  • site accessibility
  • target-site abundance
  • it distinguishes translational and post-transcriptional inhibition

  • Target Region: any
    Target Annotation:
    NGS Data Needed:
    Metaserver:





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