All the tools you need to analyse your miRNAs

PITA


Target Prediction


PITA offers a brand new view on the miRNA target prediction. The main assumption is based on the fact the mRNA structure plays a role in target recognition by thermodynamically promoting or disfavoring the interaction.

Homepage: Link

Last Software Update: Aug. 31, 2008
Publication Date: Sept. 23, 2007
Citations: 885 [via Pubmed]

Organism Specific:
  • human (online)
  • fly (online)
  • mouse (online)
  • worm (online)
  • animals (local)

  • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: easy
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    Performance : Precision: 26%
    License: GPL
    Target Prediction
    Algorithm Features:
  • seed match
  • free energy
  • site accessibility
  • target-site abundance
  • G:U pairs allowed in the seed

  • Target Region: 3' UTR
    Target Annotation:
    NGS Data Needed:
    Metaserver:





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