All the tools you need to analyse your miRNAs

PicTar


Target Prediction


Analysis Scheme:
PicTar is a computational method for identifying common targets of microRNAs. Statistical tests using genome-wide alignments of eight vertebrate genomes, PicTar's ability to specifically recover published microRNA targets, and experimental validation of seven predicted targets suggest that PicTar has an excellent success rate in predicting targets for single microRNAs and for combinations of microRNAs.

Homepage: Link

Last Software Update: March 26, 2007
Publication Date: April 3, 2005
Citations: 1826 [via Pubmed]

Organism Specific:
  • vertebrates
  • fly
  • worm

  • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: easy
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    Performance : Sensitivity: 48%, Precision: 49%
    Cross-Refferences:
  • UCSC
  • NCBI
  • miRBase

  • Target Prediction
    Algorithm Features:
  • seed match
  • conservation
  • free energy
  • target-site abundance
  • HMM

  • Target Region: 3' UTR
    Target Annotation:
    NGS Data Needed:
    Metaserver:





    Comments & Ratings
    • hqedifvod Wed 08 Aug 2018 14:36
      ss