Target Prediction Novel miRNA/Precursor Prediction Sequencing Analysis Target Functional Analysis Differential Expression Analysis Known miRNA Identification
MTide is an integrated pipeline designed to parse sRNA-seq and degradome data for miRNA-target identification in plant. It can quantify the known miRNA expression and identify novel miRNA from sRNA-seq data, identify the target of miRNA from degradome data signature, predict target of miRNA precisely, prioritize predicted target according to GO similarity to known or validated target, and identify the expressed miRNA between two samples.
Last Software Update: June 13, 2014
Publication Date: Sept. 24, 2014
Citations: 16 [via Pubmed]
Reference Genome Needed:
Installation/User Level: advanced
Precomputed Target Results Available For Download: