All the tools you need to analyse your miRNAs

miRDB


Target Prediction miRNA Databases


Analysis Scheme:
Recently updated features of miRDB, includes 2.1 million predicted gene targets regulated by 6709 miRNAs. In addition to presenting precompiled prediction data, a new feature is the web server interface that allows submission of user-provided sequences for miRNA target prediction. In this way, users have the flexibility to study any custom miRNAs or target genes of interest.

Homepage: Link

Last Software Update: March 10, 2015
Publication Date: Nov. 5, 2014
Citations: 337 [via Pubmed]

Organism Specific:
  • human
  • mouse
  • rat
  • dog
  • chicken

  • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: easy
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    Cross-Refferences:
  • NCBI
  • DIANA-TarBase
  • miRBase
  • UCSC
  • OMIM

  • Target Prediction
    Algorithm Features:
  • seed match
  • conservation
  • free energy
  • site accessibility
  • machine learning
  • 3' compensatory pairing
  • local AU content

  • Target Region: any
    Target Annotation:
    NGS Data Needed:
    Metaserver:
    miRNA Databases
    Software Used For Target Prediction:
  • MirTarget

  • Data Collection:
  • miRNA basic information
  • predicted target
  • literature mining






  • Comments & Ratings