All the tools you need to analyse your miRNAs

miRcode


Target Prediction


Provides "whole transcriptome" human microRNA target predictions based on the comprehensive GENCODE gene annotation, including >10,000 long non-coding RNA genes. Coding genes are also covered, including atypical regions such as 5'UTRs and CDS. Site conservation is evaluated based on 46 vertebrate species.

Homepage: Link

Last Software Update: June 1, 2012
Publication Date: June 19, 2012
Citations: 128 [via Pubmed]

Organism Specific:
  • human

  • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: easy
    User Adjustability: (very small)
    User support:
    Precomputed Target Results Available For Download:
    Target Prediction
    Algorithm Features:
  • seed match
  • conservation

  • Target Region: any
    Target Annotation:
    NGS Data Needed:
    Metaserver:





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