All the tools you need to analyse your miRNAs

MicroTar


Target Prediction


Analysis Scheme:
MicroTar is a microRNA target prediction program based on mRNA sequence complementarity (3'-UTR seed matches) and RNA duplex energy prediction, assessing the impact of microRNA binding on complete mRNA molecules. It uses the RNAlib library from the Vienna RNA package

Homepage: Link

Last Software Update: Sept. 24, 2008
Publication Date: Dec. 18, 2006
Citations: 30 [via Pubmed]

Organism Specific:
  • animals

  • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: easy
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    Performance : Sensitivity: 62%
    License: OSI-approved New BSD Licence
    Target Prediction
    Algorithm Features:
  • seed match
  • free energy
  • site accessibility
  • G:U pairs allowed in the seed

  • Target Region: 3' UTR
    Target Annotation:
    NGS Data Needed:
    Metaserver:





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