All the tools you need to analyse your miRNAs

MicroInspector


Target Prediction


MicroInspector will analyse a user-defined RNA sequence, which is typically an mRNA or a part of an mRNA, for the occurrence of binding sites for known and registered miRNAs. The program allows variation of temperature, the setting of energy values as well as the selection of different miRNA databases to identify miRNA-binding sites of different strength. MicroInspector could spot the correct sites for miRNA-interaction in known target mRNAs.

Homepage: Link Offline

Publication Date: July 1, 2005
Citations: 87 [via Pubmed]

Organism Specific:
  • any (from miRBase)

  • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: easy
    User Adjustability: (very small)
    User support:
    Precomputed Target Results Available For Download:
    Target Prediction
    Algorithm Features:
  • seed match
  • free energy
  • target-site abundance
  • G:U pairs allowed in the seed

  • Target Region: any
    Target Annotation:
    NGS Data Needed:
    Metaserver:





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