All the tools you need to analyse your miRNAs

ElMMo3


Target Prediction Target Functional Analysis


A Bayesian target prediction algorithm without any tunable parameters, that can be applied to sequences from any clade of species. The algorithm automatically infers the phylogenetic distribution of functional sites for each miRNA, and assigns a posterior probability to each putative target site.

Homepage: Link

Last Software Update: May 8, 2009
Publication Date: March 1, 2007
Citations: 141 [via Pubmed]

Organism Specific:
  • human
  • mouse
  • rat
  • fish
  • fly
  • worm

  • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: easy
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    Performance : Sensitivity: 80%, Specificity: 95%
    Cross-Refferences:
  • NCBI

  • Target Prediction
    Algorithm Features:
  • seed match
  • conservation
  • G:U pairs allowed in the seed
  • Bayesian method

  • Target Region: 3'UTR
    Target Annotation:
    NGS Data Needed:
    Metaserver:
    Target Functional Analysis
    Analysis Features:
  • GO Terms
  • NGS Data Needed:
    Target Prediction Data Needed:





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