All the tools you need to analyse your miRNAs

BcmicrO


Target Prediction


Analysis Scheme:
BcmicrO combines the prediction of different algorithms with Bayesian Network (TargetScan, miRanda, PicTar, mirTarget, PITA, and DianamicroT). BCmicrO was evaluated using the training data and the proteomic data. The results show that BCmicrO improves both the sensitivity and the specificity of each individual algorithm.

Homepage: Link

Last Software Update: Dec. 17, 2012
Publication Date: Dec. 17, 2012
Citations: 6 [via Pubmed]

Organism Specific:
  • human

  • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: easy
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download: (human)
    Performance : AUC: 0.69
    Target Prediction
    Algorithm Features:
  • seed match
  • conservation
  • free energy
  • site accessibility
  • target-site abundance
  • machine learning
  • 3' compensatory pairing
  • G:U pairs allowed in the seed
  • local AU content
  • Bayesian network

  • Target Region: 3' UTR, CDS
    Target Annotation:
    NGS Data Needed:
    Metaserver:
    Target Prediction Methods Used For Metaserver:
  • DIANA-microT
  • miRanda
  • PicTar
  • PITA
  • mirTarget
  • TargetScan






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