All the tools you need to analyse your miRNAs

PPImiRFS


Target Functional Analysis


Analysis Scheme:
PPImiRFS, a novel method to obtain the functional similarity scores of plant miRNA pairs based on a PPIN with semantic similarity weights generated using GO terms and graph theoretic properties.

Homepage: Link

Last Software Update: Aug. 28, 2014
Publication Date: Nov. 4, 2015
Citations: 2 [via Pubmed]

Organism Specific:
  • plants

  • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: intermediate
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    Algorithm: weighted protein-protein interaction network, modified weighted breadth-first search
    Performance : AUC: ~0.8
    License: GPLv3
    Input Data Required:
  • Weighted protein-protein interaction network file
  • predicted miRNA pairs

  • Target Functional Analysis
    Analysis Features:
  • Functional Similarity
  • NGS Data Needed:
    Target Prediction Data Needed:





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