All the tools you need to analyse your miRNAs


Target Prediction Target Functional Analysis

IntaRNA is a program for the fast and accurate prediction of interactions between two RNA molecules. It has been designed to predict mRNA target sites for given non-coding RNAs (ncRNAs) like eukaryotic microRNAs (miRNAs) or bacterial small RNAs (sRNAs), but it can also be used to predict other types of RNA-RNA interactions.

Homepage: Link

Last Software Update: Feb. 27, 2012
Publication Date: Oct. 21, 2008
Citations: 237 [via Pubmed]

Organism Specific:
  • any

  • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: intermediate (problem with installation)
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download: (for single bacterial species)
    Performance : Sensitivity: 78.3%, Specificity: 78.7%
    Target Prediction
    Algorithm Features:
  • seed match
  • free energy
  • site accessibility
  • target-site abundance
  • G:U pairs allowed in the seed

  • Target Region: any
    Target Annotation:
    Target Enrichment Analysis:
    NGS Data Needed:
    Target Functional Analysis
    Algorithm: DAVID software
    Analysis Features:
  • GO Terms
  • NGS Data Needed:
    Target Prediction Data Needed:

    Comments & Ratings