All the tools you need to analyse your miRNAs

DIANA-microT-CDS


Target Prediction Target Functional Analysis


Analysis Scheme:
DIANA-microT-CDS is the 5th version of the microT algorithm. It is specifically trained on a positive and a negative set of miRNA Recognition Elements (MREs) located in both the 3'-UTR and CDS regions. DIANA-microT-CDS provides a significant increase in sensitivity compared to the previous version (65% vs 52%), when compared against experimental proteomics data.

Homepage: Link

Last Software Update: July 1, 2012
Publication Date: May 16, 2013
Citations: 224 [via Pubmed]

Organism Specific:
  • human
  • mouse
  • fly
  • worm

  • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: easy
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download: (after registration)
    Performance : Sensitivity: 65%
    Cross-Refferences:
  • PubMed
  • miRBase
  • Ensembl
  • microT v4
  • microT-CDS
  • LncExperimental
  • LncPredicted
  • mirPath
  • UCSC

  • Target Prediction
    Algorithm Features:
  • seed match
  • conservation
  • free energy
  • site accessibility
  • target-site abundance
  • machine learning
  • 3' compensatory pairing
  • G:U pairs allowed in the seed
  • local AU content

  • Target Region: 3' UTR, CDS
    Target Annotation:
    Target Enrichment Analysis:
    NGS Data Needed:
    Metaserver:
    Target Functional Analysis
    Analysis Features:
  • Literature Mining
  • NGS Data Needed:
    Target Prediction Data Needed:





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