All the tools you need to analyse your miRNAs

RandA


Sequencing Analysis Differential Expression Analysis Known miRNA Identification


RandA is a tool for deep-sequencing data analysis. It performs various RNA-seq analysis steps including: adapter clipping; alignment against a database derived from Rfam; multiple mapping handling; read count normalization and differential expression testing for each transcript detected in the samples.

Homepage: Link

Last Software Update: Dec. 5, 2012
Publication Date: March 9, 2012
Citations: 6 [via Pubmed]

Organism Specific:
  • any (from Rfam)

  • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: intermadiate
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    License: Academic Free Licence v3
    Sequencing Analysis
    Algorithm Features:
  • known miRNA identification
  • differential expression
  • other ncRNA identification

  • Sequencing Platform Specific: any
    PARE/CLIP-Seq: /
    Differential Expression Analysis
    Algorithm: DESeq
    miRNA differential expression:
    mRNA differential expression:
    NGS Data Needed:
    Known miRNA Identification
    NGS Data Needed:





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