All the tools you need to analyse your miRNAs

PIPmir


Novel miRNA/Precursor Prediction Sequencing Analysis Known miRNA Identification


Analysis Scheme:
PIPmiR is a algorithm to identify novel plant miRNA genes from a combination of deep sequencing data and genomic features. The algorithm can be used as the full pipeline, as just a classifier, or as just a plant precursor sequence predictor.

Homepage: Link

Last Software Update: Nov. 30, 2012
Publication Date: Sept. 22, 2011
Citations: 39 [via Pubmed]

Organism Specific:
  • plants

  • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: advanced
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    Performance : Sensitivity: 91.7%, Specificity: 99.9%
    License: free for academic use
    Sequencing Analysis
    Algorithm Features:
  • novel miRNA Identification
  • known miRNA identification
  • precursor prediction

  • Sequencing Platform Specific: any
    PARE/CLIP-Seq: /
    Novel miRNA/Precursor Prediction
    Prediction Features:
  • sequence
  • structure

  • Novel miRNA / Precursor Analysis: Classification & Prediction
    NGS Data Needed:
    Known miRNA Identification
    NGS Data Needed:





    Comments & Ratings