All the tools you need to analyse your miRNAs

Omics Pipe


Sequencing Analysis Differential Expression Analysis Known miRNA Identification


Analysis Scheme:
A computational framework that automates multi-omics data analysis pipelines on high performance compute clusters and in the cloud. It supports best practice published pipelines for RNA-seq, miRNA-seq, Exome-seq, Whole Genome sequencing, ChIP-seq analyses and automatic processing of data from The Cancer Genome Atlas (TCGA). Omics Pipe provides researchers with a tool for reproducible, open source and extensible next generation sequencing analysis.

Homepage: Link

Last Software Update: Nov. 17, 2015
Publication Date: Jan. 30, 2015
Citations: 15 [via Pubmed]

Organism Specific:
  • any

  • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: advanced
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    License: MIT
    Sequencing Analysis
    Algorithm Features:
  • known miRNA identification
  • differential expression

  • Sequencing Platform Specific: Illumina, 454, SOLiD
    PARE/CLIP-Seq: /
    Differential Expression Analysis
    Algorithm: DESeq2
    miRNA differential expression:
    mRNA differential expression:
    NGS Data Needed:
    Known miRNA Identification
    NGS Data Needed:





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