All the tools you need to analyse your miRNAs

miRPlant


Novel miRNA/Precursor Prediction Sequencing Analysis Known miRNA Identification


The objective of miRPlant program is to predict novel plant miRNA, while providing a user-friendly interface with improved accuracy of prediction. miRPlant does not require any third party tools such as mapping or RNA secondary structure prediction tools.

Homepage: Link

Last Software Update: Nov. 13, 2015
Publication Date: Aug. 12, 2014
Citations: 23 [via Pubmed]

Organism Specific:
  • plants

  • Reference Genome Needed: (if other plant than rice is analysed)
    Online/Local: /
    Installation/User Level: easy
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    License: GPLv3
    Sequencing Analysis
    Algorithm Features:
  • novel miRNA Identification
  • known miRNA identification
  • precursor prediction

  • Sequencing Platform Specific: any
    PARE/CLIP-Seq: /
    Novel miRNA/Precursor Prediction
    Prediction Features:
  • structure
  • conservation

  • Novel miRNA / Precursor Analysis: Prediction
    NGS Data Needed:
    Known miRNA Identification
    NGS Data Needed:





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