All the tools you need to analyse your miRNAs

MIRPIPE


Sequencing Analysis Known miRNA Identification IsomiRs Identification


Analysis Scheme:
MIRPIPE represents a new pipeline for the quantification of microRNA based on smallRNA sequencing reads. In opposition to present algorithms that generally rely on genomic data to identify miRNAs, MIRPIPE focuses on niche model organisms that lack such information. Among the MIRPIPE features are automatic trimming and adapter removal of raw RNA-Seq reads originating from various sequencing instruments, clustering of isomiRs, and quantification of detected miRNAs by homology search versus public or user uploaded reference databases.

Homepage: Link

Last Software Update: Aug. 26, 2016
Publication Date: Aug. 26, 2016
Citations: 8 [via Pubmed]

Organism Specific:
  • human
  • mouse
  • fly
  • fish
  • chicken
  • rat
  • any

  • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: easy
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    License: BSD-3-Clause
    Input Data Required:
  • FASTA
  • FASTQ

  • Sequencing Analysis
    Algorithm Features:
  • known miRNA identification
  • isomiRs identyfication

  • Sequencing Platform Specific: Illumina, Sanger, 454
    PARE/CLIP-Seq: /
    Known miRNA Identification
    NGS Data Needed:
    IsomiRs Identification
    NGS Data Needed:





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