All the tools you need to analyse your miRNAs

MIReNA


Novel miRNA/Precursor Prediction Sequencing Analysis Known miRNA Identification


Analysis Scheme:
MIReNA looks for miRNA sequences by exploring a multidimensional space defined by only five (physical and combinatorial) parameters characterizing acceptable pre-miRNAs. MIReNA validates pre-miRNAs with high sensitivity and specificity, and detects new miRNAs by homology from known miRNAs or from deep sequencing data.

Homepage: Link

Last Software Update: June 9, 2010
Publication Date: June 30, 2010
Citations: 55 [via Pubmed]

Organism Specific:
  • plants
  • animals

  • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: advanced
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    Performance : Specificity: 96.09%, Sensitivity: 95.11%
    License: CeCILL
    Sequencing Analysis
    Algorithm Features:
  • known miRNA identification
  • precursor prediction

  • Sequencing Platform Specific: Illumina
    PARE/CLIP-Seq: /
    Novel miRNA/Precursor Prediction
    Prediction Features:
  • structure

  • Novel miRNA / Precursor Analysis: Classification & Prediction
    NGS Data Needed:
    Known miRNA Identification
    NGS Data Needed:





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