All the tools you need to analyse your miRNAs

miRDeep2


Novel miRNA/Precursor Prediction Sequencing Analysis Known miRNA Identification


Analysis Scheme:
miRDeep2 is a completely overhauled tool which discovers microRNA genes by analyzing sequenced RNAs. The tool reports known and hundreds of novel microRNAs with high accuracy in seven species representing the major animal clades

Homepage: Link

Last Software Update: Feb. 5, 2015
Publication Date: Sept. 12, 2011
Citations: 591 [via Pubmed]

Organism Specific:
  • any (from miRBase)

  • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: intermediate
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    Performance : Specificity: 89%, Accuracy: 98.6-99.9%
    Sequencing Analysis
    Algorithm Features:
  • novel miRNA Identification
  • known miRNA identification
  • precursor prediction

  • Sequencing Platform Specific: Illumina
    PARE/CLIP-Seq: /
    Novel miRNA/Precursor Prediction
    Prediction Features:
  • structure
  • conservation

  • Novel miRNA / Precursor Analysis: Prediction
    NGS Data Needed:
    Known miRNA Identification
    NGS Data Needed:





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