CAP-miRSeq
Novel miRNA/Precursor Prediction Sequencing Analysis Differential Expression Analysis Known miRNA Identification
Comprehensive analysis pipeline for deep microRNA sequencing (CAP-miRSeq) integrates read preprocessing, alignment, mature/precursor/novel miRNA qualification, variant detection in miRNA coding region, and flexible differential expression between experimental conditions. According to computational infrastructures, users can run samples sequentially or in parallel for fast processing. In either a case, summary and expression reports for all samples are generated for easier quality assessment and downstream analyses.
Homepage: Link
Last Software Update: Sept. 3, 2014
Publication Date: June 3, 2014
Citations: 93 [via Pubmed]
Organism Specific:
Reference Genome Needed:
Online/Local:
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Installation/User Level: advanced
User Adjustability:
User support:
Precomputed Target Results Available For Download:
License: GPL