All the tools you need to analyse your miRNAs

SSCprofiler


Novel miRNA/Precursor Prediction


Analysis Scheme:
A computational tool utilizing a probabilistic method based on Profile Hidden Markov Models to predict novel miRNA precursors, which simultaneously integrates biological features such as sequence, structure and conservation.

Homepage: Link

Last Software Update: March 25, 2009
Publication Date: March 25, 2009
Citations: 21 [via Pubmed]

Organism Specific:
  • human

  • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: easy
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    Performance : Sensitivity: 88.95%, Specificity: 84.16%
    Novel miRNA/Precursor Prediction
    Prediction Features:
  • sequence
  • structure
  • conservation
  • Expression Information

  • Algorithm: Profile HMM
    Novel miRNA / Precursor Analysis: Prediction
    NGS Data Needed:





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