All the tools you need to analyse your miRNAs

SplamiR


Novel miRNA/Precursor Prediction


Analysis Scheme:
SplamiR is the first method for the de novo prediction of spliced miRNAs. Designed specifically for plants, it takes the sequence of a potential target mRNA as input find miRNAs whose intron-containing precursor sequence cannot be recognized by other approaches.

Homepage: Link

Last Software Update: Jan. 25, 2011
Publication Date: March 17, 2011
Citations: 2 [via Pubmed]

Organism Specific:
  • plants

  • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: intermediate
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    Input Data Required:
  • genomic sequence
  • sequence of assumed target

  • Novel miRNA/Precursor Prediction
    Prediction Features:
  • sequence
  • structure
  • conservation
  • splice site detection

  • Algorithm: BLAST, GeneSplicer, miR-abela
    Novel miRNA / Precursor Analysis: Prediction
    NGS Data Needed:





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