All the tools you need to analyse your miRNAs

miRNAminer


Novel miRNA/Precursor Prediction


A web-based tool used for homologous miRNA gene search in several species. Given a search query, candidate homologs are identified using BLAST search and then tested for their known miRNA properties, such as secondary structure, energy, alignment and conservation, in order to assess their fidelity. Default parameters are stringent, though these can be relaxed. miRNAminer can be used prior to depositing novel miRNAs in public databases.

Homepage: Link

Last Software Update: Feb. 20, 2008
Publication Date: Jan. 23, 2008
Citations: 24 [via Pubmed]

Organism Specific:
  • human
  • mouse
  • rat
  • worm
  • chicken
  • other animals (selectable)

  • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: easy
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    Performance : Sensitivity: 88%
    Novel miRNA/Precursor Prediction
    Prediction Features:
  • sequence
  • structure
  • conservation

  • Algorithm: Homologous Search
    Novel miRNA / Precursor Analysis: Prediction
    NGS Data Needed:





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