All the tools you need to analyse your miRNAs


Novel miRNA/Precursor Prediction

MIRINHO a novel alternative to a classical folder based on a thermodynamic Nearest-Neighbour (NN) model for computing the free energy and predicting the classical hairpin structure of a pre-miRNA. MIRINHO has quadratic instead of cubic complexity and is much more efficient also in practice. When applied to sRNAseq data of plants, it gives in general better results than classical folders.

Homepage: Link

Last Software Update: June 5, 2015
Publication Date: May 29, 2015
Citations: 7 [via Pubmed]

Organism Specific:
  • animals
  • plants

  • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: easy
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    Performance : Sensitivity: 97%, Specificity: 64%
    License: CeCILL
    Novel miRNA/Precursor Prediction
    Prediction Features:
  • sequence
  • structure

  • Algorithm: thermodynamic Nearest-Neighbour (NN) model
    Novel miRNA / Precursor Analysis: Prediction
    NGS Data Needed:

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