All the tools you need to analyse your miRNAs

MiRdup


Novel miRNA/Precursor Prediction


Analysis Scheme:
A computational predictor for the identification of the most likely miRNA location within a given pre-miRNA or the validation of a candidate miRNA. MiRdup is based on a random forest classifier trained with experimentally validated miRNAs from miRBase, with features that characterize the miRNA-miRNA* duplex.

Homepage: Link

Last Software Update: March 11, 2015
Publication Date: June 8, 2013
Citations: 16 [via Pubmed]

Organism Specific:
  • any

  • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: intermediate
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    Performance : Accuracy: 80%
    License: GPLv3
    Novel miRNA/Precursor Prediction
    Prediction Features:
  • sequence
  • structure
  • conservation

  • Algorithm: Random Forest Classifier
    Novel miRNA / Precursor Analysis: Classification
    NGS Data Needed:





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