All the tools you need to analyse your miRNAs


Target Prediction Novel miRNA/Precursor Prediction Sequencing Analysis Known miRNA Identification

Analysis Scheme:
A platform based on LeARN, dedicated to analyse data generated by RNAseq small RNA projects.

Homepage: Link

Last Software Update: Oct. 1, 2009
Publication Date: Jan. 14, 2008
Citations: 8 [via Pubmed]

Organism Specific:
  • any

  • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: advanced
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    License: CECILL2 (
    Target Prediction
    Algorithm Features:
  • seed match
  • conservation
  • free energy
  • G:U pairs allowed in the seed

  • Target Region: 3' UTR, CDS
    Target Annotation:
    Algorithm: miRanda
    NGS Data Needed:
    Sequencing Analysis
    Algorithm Features:
  • known miRNA identification
  • target prediction
  • precursor prediction
  • other ncRNA identification

  • Sequencing Platform Specific: 454, Illumina
    PARE/CLIP-Seq: /
    Novel miRNA/Precursor Prediction
    Prediction Features:
  • structure

  • Algorithm: MiRfold
    Novel miRNA / Precursor Analysis: Prediction
    NGS Data Needed:
    Known miRNA Identification
    NGS Data Needed:

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