All the tools you need to analyse your miRNAs


Novel miRNA/Precursor Prediction Sequencing Analysis Known miRNA Identification

Analysis Scheme:
A free web server for the analysis of short RNAs from high-throughput sequencing data.

Homepage: Link

Last Software Update: Oct. 30, 2014
Publication Date: May 27, 2011
Citations: 33 [via Pubmed]

Organism Specific:
  • human
  • monkey
  • mouse
  • rat
  • fly
  • worm
  • fish

  • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: easy
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
  • UCSC

  • Sequencing Analysis
    Algorithm Features:
  • novel miRNA Identification
  • known miRNA identification
  • other ncRNA identification

  • Sequencing Platform Specific: any
    PARE/CLIP-Seq: /
    Novel miRNA/Precursor Prediction
    Prediction Features:
  • structure
  • conservation

  • Algorithm: RandomForest
    Novel miRNA / Precursor Analysis: Prediction
    NGS Data Needed:
    Known miRNA Identification
    NGS Data Needed:

    Comments & Ratings