All the tools you need to analyse your miRNAs

WMD3


Target Prediction Other Tools


Analysis Scheme:
WMD3 - Web app for the automated design of artificial plant microRNAs. Platform requires only selection of favorite candidates according to a small set of criteria. It is designed to optimize both intrinsic small RNA properties as well as specificity within the given transcriptome.

Homepage: Link

Last Software Update: July 3, 2009
Publication Date: Feb. 4, 2008
Citations: 165 [via Pubmed]

Organism Specific:
  • plants

  • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: intermediate/easy
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    Algorithm: BLAST, RNAcfold, RNAup
    License: GNU GPL2
    Input Data Required:
  • target name
  • target sequence in FASTA format

  • Target Prediction
    Algorithm Features:
  • seed match
  • free energy
  • site accessibility

  • Target Region: any
    Target Annotation:
    NGS Data Needed:
    Metaserver:





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