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PROmiRNA


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Analysis Scheme:
PROmiRNA is a program for annotating miRNA promoters in human, as well as other species. It uses deepCAGE data from the FANTOM4 Consortium and integrated cage tag counts and other promoter features, such as CpG content, conservation and TATA box affinity, to score the potential of a candidate regions to be a promoter. Given a list of genomic regions of interest, in the form of a gff file, PROmiRNA returns the most probable promoter locations, together with the posterior probabilities calculated by the model.

Homepage: Link

Last Software Update: Sept. 30, 2013
Publication Date: Aug. 16, 2013
Citations: 28 [via Pubmed]

Organism Specific:
  • animals

  • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: advanced
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    Algorithm: semi-supervised mixture model
    Performance : false positive rate: <20%
    Input Data Required:
  • genomic region of interest in a gff file






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