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miRVaS


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miRVaS predicts the impact of genetic variants on miRNAs. It annotates the location of the variant relative to functional regions within the miRNA hairpin (seed, mature, loop, hairpin arm, flanks) based on an accompanying database of miRNA genes with all functional regions.

Homepage: Link

Last Software Update: July 29, 2015
Publication Date: Feb. 18, 2016
Citations: 5 [via Pubmed]

Organism Specific:
  • human

  • Reference Genome Needed: (local)
    Online/Local: /
    Installation/User Level: easy
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    Algorithm: RNAfold
    Performance : Sensitivity: 71%, Specificity: 86%
    Input Data Required:
  • a variant file
  • a genome file (local version)
  • miRNA database file (local version)






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