All the tools you need to analyse your miRNAs

miRQuest


Novel miRNA/Precursor Prediction Other Tools


miRQuest is a user-friendly Web server and middleware designed for two main functions: i) a miRNA prediction interface, which integrates four main tools; and ii) a benchmarking function, with which different sets of data can be used to identify which one of the four integrated tools is more suitable for the species of interest.

Homepage: Link

Last Software Update: March 24, 2016
Publication Date: March 28, 2016
Citations: 1 [via Pubmed]

Organism Specific:
  • human
  • plants

  • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: easy
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    Input Data Required:
  • pre-miRNA sequence in FASTA format
  • negative/positive sequence datasets

  • Novel miRNA/Precursor Prediction
    Prediction Features:
  • sequence
  • structure
  • miRNA/miRNA* position prediction

  • Algorithm: Triplet-SVM, MiPred, NOVOMIR, HHMMiR
    Novel miRNA / Precursor Analysis: Classification
    NGS Data Needed:





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