All the tools you need to analyse your miRNAs

starBase


miRNA Databases


Analysis Scheme:
It is designed for decoding Pan-Cancer and Interaction Networks of lncRNAs, miRNAs, competing endogenous RNAs(ceRNAs), RNA-binding proteins (RBPs) and mRNAs from large-scale CLIP-Seq data and tumor samples. starBase is also developed for deciphering Protein-RNA and miRNA-target interactions, such as protein-lncRNA, protein-sncRNA, protein-mRNA, protein-pseudogene, miRNA-lncRNA, miRNA-mRNA, miRNA-circRNA, miRNA-pseudogene, miRNA-sncRNA interactions and ceRNA networks from CLIP-Seq datasets.

Homepage: Link

Last Software Update: Sept. 1, 2013
Publication Date: Dec. 1, 2013
Citations: 481 [via Pubmed]

Organism Specific:
  • human
  • mouse
  • worm

  • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: easy
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    Cross-Refferences:
  • NCBI
  • PubMed
  • miRBase
  • UCSC

  • miRNA Databases
    Software Used For Target Prediction:
  • TargetScan
  • PITA
  • PicTar
  • RNA22
  • miRanda

  • Data Collection:
  • target experimental
  • predicted target
  • diseases/pathways
  • miRNA-ncRNA interaction
  • target expression
  • miRNA expression
  • transcription factor-miRNA regulation






  • Comments & Ratings