All the tools you need to analyse your miRNAs

RNA central


miRNA Databases


RNAcentral is recognized as comprehensive database, providing access to an extensive collection over 18 million non-coding RNA (ncRNA) sequences derived from different species . The RNAcentral database has recently integrated secondary (2D) structure information for over 13 million sequences, establishing RNAcentral as the world's largest repository for RNA 2D structures. RNAcentral has compiled a comprehensive catalog of ncRNA data, including sequence similarity search, detailed ncRNA annotations. At present, the RNAcentral comprises 59 Expert Databases, including miRBase, Ensembl Plants, Rfam, TAIR etc

Homepage: Link

Last Software Update: Jan. 25, 2023
Publication Date: Jan. 8, 2021
Citations: 115 [via Pubmed]

Organism Specific:
  • any

  • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: easy
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    Input Data Required:
  • Search by gene
  • species
  • accession or any keyword

  • Cross-Refferences:
  • 5SrRNAdb
  • CRS
  • CRW
  • Ensembl Fungi
  • Metazoa
  • Protists
  • GeneCards
  • IntAct
  • LncBase
  • LncBook
  • MalaCards
  • MirGeneDB
  • dictyBase
  • ENA
  • Ensembl
  • Ensembl Metazoa
  • Ensembl Plants
  • Ensembl Protists
  • Ensembl/GENCODE
  • EVLncRNAs
  • Expression Atlas
  • FlyBase
  • Greengenes
  • GtRNAdb
  • HGNC
  • LNCipedia
  • lncRNAdb
  • MGI miRBase
  • Modomics
  • NONCODE
  • PDBe
  • piRBase
  • PLncDB
  • PomBase
  • PSICQUIC
  • RDP
  • RefSeq
  • Rfam
  • RGD
  • Ribocentre
  • RiboVision
  • SGD
  • SILVA
  • snoDB
  • snOPY
  • snoRNA Database
  • SRPDB
  • TAIR
  • TarBase
  • tmRNA Website
  • WormBase
  • ZFIN
  • ZWD
  • miRTarBase
  • NPInter
  • RNApathwaysDB
  • snoRNA Atlas
  • sRNAmap
  • tmRDB
  • tRNAdb

  • miRNA Databases
    Data Collection:
  • miRNA basic information
  • diseases/pathways
  • literature mining






  • Comments & Ratings