All the tools you need to analyse your miRNAs

PmiREN


miRNA Databases


The Plant miRNA Encyclopedia (PmiREN) is a comprehensive plant repository that contains approximately 39 700 miRNA sequences from 179 different plant species. According to the latest release of PmiREN (v2.0), the database contains an extensive collection of over 38000 miRNA sequences from 179 different species including model plants and major agricultural crops. PmiREN allows users to explore detailed information on discovered and annotated miRNAs. This includes data such as genomic location, miRNA expression profiles, secondary structures of hairpin precursors, miRNA targets that have been predicted using advanced bioinformatics tools and relevant information of miRNA conservation in diverse plant species.

Homepage: Link

Publication Date: Sept. 23, 2021
Citations: 31 [via Pubmed]

Organism Specific:
  • plants

  • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: easy
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    Input Data Required:
  • miRNA locus ID
  • miRNA locus accession
  • miRNA sequence
  • sequence fasta file

  • miRNA Databases
    Software Used For Target Prediction:
  • psRNATarget
  • RNAhybrid
  • CleaveLand4

  • Data Collection:
  • miRNA basic information
  • target experimental
  • predicted target
  • literature mining
  • target expression
  • miRNA expression






  • Comments & Ratings