All the tools you need to analyse your miRNAs

OncomiRdbB


miRNA Databases


Analysis Scheme:
OncomiRdbB is an integrated database consisting of the miRNAs of human and mouse genomes, their sequences, chromosome and gene locations, respective targets and their description, pathways it regulates in breast cancer.The miRNAs were mined from miRBase, Phenomir, Mir2Disease etc and their respective sequences were obtained from miRbase. Their target genes were computationally derived from different oncogenic pathways such as wnt, Jak- Stat, MAPK, mTOR, VEGF, Apoptosis and Notch pathways and their genomic sequences from ENSEMBLE- BioMart. Additionally, we have also listed the experimentally validated novel microRNAs for human breast cancer.

Homepage: Link

Last Software Update: Jan. 15, 2014
Publication Date: Jan. 15, 2014
Citations: 3 [via Pubmed]

Organism Specific:
  • human
  • mouse

  • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: easy
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    Cross-Refferences:
  • Pubmed
  • miRBase
  • NCBI

  • miRNA Databases
    Software Used For Target Prediction:
  • miRanda
  • PicTar
  • TargetScan

  • Data Collection:
  • target experimental
  • predicted target
  • diseases/pathways
  • literature mining






  • Comments & Ratings