All the tools you need to analyse your miRNAs


miRNA Databases

Analysis Scheme:
MtiBase (MiRNA-target interactions database) is a database that identify CDS-located and 5'UTR-located miRNA binding sites and systematically evaluate miRNA regulatory effects on mRNA stability and translation by integrating multiple high-throughput experimental datasets such as Ago CLIP-Seq (HITS-CLIP, PAR-CLIP, iCLIP, CLASH), mRNA profiles, ribisome-protected fragment sequencing (RPF) and pulsed stable isotope labeling with amino acids in culture (pSILAC). The SNP influence to the regulatory effects of CDS-located and 5'UTR-located miRNA binding sites was also systematically investigated.

Homepage: Link

Last Software Update: Sept. 15, 2015
Publication Date: Oct. 1, 2015
Citations: 17 [via Pubmed]

Organism Specific:
  • human
  • mouse

  • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: easy
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
  • UCSC
  • miRBase
  • Ensembl
  • PubMed
  • dbSNP

  • miRNA Databases
    Software Used For Target Prediction:
  • miRanda
  • RNA22
  • miRWalk
  • STarMir
  • microT-CDS

  • Data Collection:
  • target experimental
  • predicted target
  • target expression
  • miRNA expression
  • miRNA-SNP related informations

  • Comments & Ratings