All the tools you need to analyse your miRNAs

miRWalk


miRNA Databases


Analysis Scheme:
A publicly available comprehensive resource, hosting the predicted as well as the experimentally validated microRNA (miRNA)-target interaction pairs.

Homepage: Link

Last Software Update: April 29, 2015
Publication Date: July 30, 2015
Citations: 275 [via Pubmed]

Organism Specific:
  • human
  • mouse
  • rat

  • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: easy
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    Cross-Refferences:
  • Gene
  • UniGene
  • Nucleotide
  • HGNC
  • RGD
  • MGI
  • VEGA
  • OMIM
  • Ensembl
  • UCSC
  • AceView
  • DGV
  • CCDS
  • Genotype
  • ClinVar
  • dbVar
  • PheGenl
  • Neighbourhood
  • GeneMania
  • EST
  • Probe
  • Epigenomics
  • Protein
  • CDD
  • GEO
  • ProteomicsDB
  • HPM
  • UniProt
  • PubChem Compound
  • PMC
  • PubMed
  • miRBase
  • RFAM
  • KEGG
  • PANTHER
  • WikiPathways
  • DO
  • HPO
  • Taxonomy

  • miRNA Databases
    Software Used For Target Prediction:
  • DIANA-microTv4.0
  • DIANA-microT-CDS
  • miRanda
  • mirBridge
  • miRDB4.0
  • miRmap
  • miRNAMap
  • doRiNA
  • PicTar2
  • PITA
  • RNA22v2
  • RNAhybrid2.1
  • Targetscan6.2

  • Data Collection:
  • miRNA basic information
  • target experimental
  • predicted target
  • diseases/pathways
  • literature mining
  • miRNA-ncRNA interaction
  • target expression
  • miRNA expression






  • Comments & Ratings