All the tools you need to analyse your miRNAs

miRTarBase


miRNA Databases


Analysis Scheme:
miRTarBase provides information about experimentally validated miRNA-target interactions (MTIs). The latest update of the miRTarBase expanded it to identify systematically Argonaute-miRNA-RNA interactions from 138 crosslinking and immunoprecipitation sequencing (CLIP-seq) data sets that were generated by 21 independent studies. The database contains 4966 articles, 7439 strongly validated MTIs (using reporter assays or western blots) and 348 007 MTIs from CLIP-seq. The number of MTIs in the miRTarBase has increased around 7-fold since the 2014 miRTarBase update.

Homepage: Link

Last Software Update: Sept. 15, 2015
Publication Date: Nov. 20, 2015
Citations: 344 [via Pubmed]

Organism Specific:
  • animals
  • plants
  • viruses

  • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: easy
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    Cross-Refferences:
  • miRBase
  • TargetScanS 5.1
  • MicroCosm
  • microRNA.org
  • miRecords
  • miRDB
  • miRo
  • miRNAMap 2.0
  • RefSeq
  • Entrez Gene
  • BioGPS
  • Wikipedia
  • iHop
  • PubMed

  • miRNA Databases
    Software Used For Target Prediction:
  • miRanda
  • TargetScan

  • Data Collection:
  • miRNA basic information
  • target experimental
  • predicted target
  • diseases/pathways
  • literature mining
  • target expression
  • miRNA expression






  • Comments & Ratings